Methods for structure analysis

From MDWiki
Jump to: navigation, search

Methods for structure analysis

The structure PDB file of 2ph1 was obtained from RCSB Protein Data Bank. The structure file was then observed in Pymol. The structure PDB file was submitted to Dali to obtain the structure neighbor files which compare the similarity of 2ph1 and other proteins. The protein with the highest Z-score 1g3q was obtained from the Dali result. The structure PDB file was also downloaded from RCSB Protein Data Bank. Two structures were aligned by Pymol. An electron density map was fail to obtain from Pymol due to operation failure. The other structure information was obtained through other online analysis program such as EMI and Interpro.

Personal tools