Uploads by Rong Chen
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Date | Name | Thumbnail | Size | Description | Versions |
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07:20, 6 August 2009 | Gen posre.txt (file) | ![]() |
2 KB | A VMD script that can be used for creating position restraint file to be used in GROMACS. It is a plain text file. Use "source filename" in the Tcl/Tk console of VMD to run it. | 1 |
06:07, 20 August 2009 | Secondary structure.txt (file) | ![]() |
559 bytes | A VMD script which calculates the overall secondary structure in a protein over a trajectory based on Stride. You are welcome to test it. :) Usage: Load your trajectory into VMD. In the Tcl/Tk counsole, run: Source Secondary_structure.txt. | 1 |