ProteinAssignment2008

Below there are pages provided which contain tables for our target proteins that summarize important information and links to databases. When you have formed groups and chosen your target protein, claim the target by adding your names into the protein assignment table below.

Protein structure and sequences

Target PDB Table contains links to stucture and sequence data.

Human orthologs of target proteins

Target Blast and Symatlas Table contains preset Blast search and links to functional data of human and mouse orthologs.

Please choose from the following targets:

high priority: 2, 5, 7, 9, 10, 11, 13, 18, 20, 21, 22
alternative targets: 1, 12
do not initially choose: 3, 4, 6, 8, 14, 15, 16, 17, 19

Protein Assignment Table

target number	PDB code	protein name	investigators
16	3c5hA	glucocorticoid receptor DNA binding factor 1	Elizabeth Skippington, Mittchell Stanton-Cook, Thomas Huber
18	2cfsA	Pyridoxal (pyridoxine, vitamin B6) phosphatase	Yong Ming Lim, Du Guoqing, Sitoh Kheng Wai
5	2opw	Phytanoyl-CoA dioxygenase domain containing 1 isoform a	Eleanor McDonald, Liam Coulthard and Daniel Foskey
7	2ph1A	nucleotide binding protein 2 (MinD homolog, E.coli)	Mo Zhao, Siowwei Lee, Kenn Lu
13	2pbl	Arylformamidase	Basma Al Alaiwat, Sebastian Mynott, Thomas Parker
22	3b5qA	Arylsulfatase K	Darshani Rupasinghe, Natasha Ferber
9	2nxf	hypothetical protein LOC56985	Ivana Ferreira, Connor Skennerton, Nuwan Dahanayake
21	2ijz	Aspartyl Aminopeptidase	Luke Budianto Ishak, Krishna-Lila Shastri, Teng Meng Hua
11	2ece	Selenium binding protein	Lopson Kebapetswe, Robert O'Malley
20	2qq5	dehydrogenase/reductase (SDR family) member 1	Anton Lord, Charlie Brunello and Matthew Lovell
1	2qgnA	tRNA isopentenyltransferase 1	Jinhsien Choo, Emilyn Tan and Ana Lei

Winter vacation scholarship

Please indicate if you're interested to be considered for the winter vacation scholarship to complete your work for publication. This will have no influence on the project mark!

name	protein name	keen and available for scholarship
Elizabeth Skippington	glucocorticoid receptor DNA binding factor 1	yes
Basma Al Alaiwat, Sebastian Mynott	Arylformamidase	yes
Ivana Ferreira, Connor Skennerton	hypothetical protein LOC56985	yes
Anton Lord	dehydrogenase/reductase (SDR family) member 1	yes

--ThomasHuber 17:00, 24 April 2008 (EST)