Structure work done by Michael: Difference between revisions
From MDWiki
Jump to navigationJump to search
No edit summary |
No edit summary |
||
Line 17: | Line 17: | ||
[[Image:Comparison stuff 2.jpeg]] | [[Image:Comparison stuff 2.jpeg]] | ||
cropped print screen of proteins. Purple is: 1qxmB | cropped print screen of proteins. Purple is: 1qxmB | ||
[[Structure work done by Michael]] |
Revision as of 07:04, 26 May 2009
Unfortunately PDB databank down so very little work was able to be done.
Here is link to Dali file for structural allignment of Fascin 1: http://ekhidna.biocenter.helsinki.fi/dali_server/results/20090512-0050-75e94ac980c3ad7a77bfb91e13a9d591/index.html
From here comparative structure allignments were possible. All of which were very similar to fascin 1 providing more clues as to function of the protein.
Yellow region on right hand picture is conserved region from sequence multiple alignment. Figure on left is structure allignments (note pink ligands in first and purple ligands in second).
List of structures is: mol1A/1dfcA/1jlyA/1ijtA/1qxmB/1ev2A/1bfgA/1axmA/4fgfA/
cropped print screen of proteins. Pink is: 4fgfA