Clustal Alignment: Difference between revisions
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CLUSTAL W (1.83) multiple sequence alignment | CLUSTAL W (1.83) multiple sequence alignment | ||
gi|118479060|ref|YP_896211.1| (Bacillus thuringiensis) | |||
gi|30021926|ref|NP_833557.1| (Bacillus cereus) | |||
gi|30021926|ref|NP_833557.1| | |||
gi|16078668|ref|NP_389487.1| (Bacillus subtilis | |||
gi|16078668|ref|NP_389487.1| | |||
1T9H_A|PDBID|CHAIN|SEQUENCE (Bacillus subtilis a circularly permuted GTPase.)(not ours) | |||
1T9H_A|PDBID|CHAIN|SEQUENCE | |||
MAIKRCSYCEIKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVD | |||
<nowiki>------------------</nowiki>MVIQWFPGHMAKARRQVTEKLKLIDVVIELVD | |||
<nowiki>------------------</nowiki>MTIQWFPGHMAKARREVTEKLKLIDIVYELVD | |||
<nowiki>------------------</nowiki>MARHHHHHHMPEGK-IIKALSGFYYVLDESED | |||
*. : . **.:.: :. : :: * * | |||
AR--LPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH | |||
AR--LPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH | |||
AR--IPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI | |||
SDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIKERTNELIR | |||
: : .*. : .: :. :: :*: . : :: | |||
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPN | |||
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPN | |||
RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPN | |||
PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE | |||
.:. :. : .: . : ::* : . * :.: : | |||
VGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWP-- | |||
VGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWP-- | |||
VGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP-- | |||
DQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQ | |||
.: : :: : * :*:::: .:.. : :: ::. | |||
--KFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPER--LKER | |||
--KFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPER--LKER | |||
--KFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPER--LKER | |||
SGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADT | |||
:..*:. . * .:.* : . . . *.:* :.. : : | |||
YNLNDIP------EDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELR | |||
YNLNEIP------EDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELR | |||
YGLDEIP------EDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRDIR | |||
PGFSSLEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVE | |||
.:..: *:: * * :: .. * :. .:.. : : :. | |||
GGKLGKMTFETPEEFAEQTEDAEKVEEV | |||
GGKLGKMTFETPEEFGEQVEDVEKIEEV | |||
TEKFGRLSFEQPTM-------------- | |||
DGELKQYRYDHYVEFMTEIKDRKPRY-- | |||
:: : :: |
Latest revision as of 06:35, 8 May 2007
CLUSTAL W (1.83) multiple sequence alignment
gi|118479060|ref|YP_896211.1| (Bacillus thuringiensis)
gi|30021926|ref|NP_833557.1| (Bacillus cereus)
gi|16078668|ref|NP_389487.1| (Bacillus subtilis
1T9H_A|PDBID|CHAIN|SEQUENCE (Bacillus subtilis a circularly permuted GTPase.)(not ours)
MAIKRCSYCEIKEKEGGNMVIQWFPGHMAKARRQVTEKLKLIDVVIELVD
------------------MVIQWFPGHMAKARRQVTEKLKLIDVVIELVD
------------------MTIQWFPGHMAKARREVTEKLKLIDIVYELVD
------------------MARHHHHHHMPEGK-IIKALSGFYYVLDESED
*. : . **.:.: :. : :: * *
AR--LPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH AR--LPLSSRNPMIDEIITHKPRLVVLNKADMADDRLTKQWIAYFKEKGH AR--IPMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQGI SDKVIQCRGRGIFRKNKITPLVGDYVVYQAENDKEGYLMEIKERTNELIR
- : .*. : .: :. :: :*: . : ::
MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPN MAISINAQAGQGMKEIAAACKVLVKEKFDKMVAKGIRPRAIRALIVGIPN RSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPN PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIE
.:. :. : .: . : ::* : . * :.: :
VGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWP-- VGKSTLINKLAKKNIAKTGDRPGVTTAQQWIKVGKEMELLDTPGILWP-- VGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP-- DQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQ
.: : :: : * :*:::: .:.. : :: ::.
--KFEDELVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPER--LKER --KFEDQLVGLRLATTGAIKDSILNLQDVAVYALRFMEKHYPER--LKER --KFEDELVGLRLAVTGAIKDSIINLQDVAVFGLRFLEEHYPER--LKER SGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADT
:..*:. . * .:.* : . . . *.:* :.. : :
YNLNDIP------EDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELR YNLNEIP------EDIVELFDAIGKNRGCLMGGGMIDYDKTSELVLRELR YGLDEIP------EDIAELFDAIGEKRGCLMSGGLINYDKTTEVIIRDIR PGFSSLEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVE
.:..: *:: * * :: .. * :. .:.. : : :.
GGKLGKMTFETPEEFAEQTEDAEKVEEV GGKLGKMTFETPEEFGEQVEDVEKIEEV TEKFGRLSFEQPTM-------------- DGELKQYRYDHYVEFMTEIKDRKPRY--
:: : ::