Chromosome 1 open reading frame 41 Evolution: Difference between revisions
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== CLUSTALX == | == CLUSTALX == | ||
Multiple sequence alignment with all of the 27 sequences obtained from BLAST is shown below: | |||
[[Image:Platypus.png]] | |||
The sequence for platypus seems unrelated to the other sequences. Therefore, the sequence was removed and the remaining 26 sequences was realigned. | |||
[[Image:MSA.png]] | [[Image:MSA.png]] | ||
Line 12: | Line 22: | ||
== Phylogenetic Tree == | == Phylogenetic Tree == | ||
After obtaining the multiple sequence alignment, phylogenetic tree was construct based on the result from multiple sequence alignment. | |||
[[Image:Tree.png]] | [[Image:Tree.png]] |
Revision as of 13:18, 19 May 2009
BLAST
The above shows the result from BLASTP search. The sequences of these proteins are aligned to observe the conserved regions.
CLUSTALX
Multiple sequence alignment with all of the 27 sequences obtained from BLAST is shown below:
The sequence for platypus seems unrelated to the other sequences. Therefore, the sequence was removed and the remaining 26 sequences was realigned.
Phylogenetic Tree
After obtaining the multiple sequence alignment, phylogenetic tree was construct based on the result from multiple sequence alignment.