|
|
Line 1: |
Line 1: |
| <TABLE border="1" summary="target table">
| | Below there are pages provided which contain tables for our target proteins that summerise important information and links to databases. |
|
| |
|
| <TR bgcolor="yellow"><TH>#
| | === Protein structure and sequences === |
| <TH>PDB
| | [[Target PDB Table]] contains links to stucture and sequence data. |
| <TH>release
| |
| <TH>sequence
| |
| <TH>human
| |
| <TH>human-len
| |
| <TH>%seqID
| |
| <TH>ali-len
| |
| <TH>HomoloGene
| |
| <TH>PubMed
| |
| <TH>name
| |
|
| |
|
| <TR><TH>1
| | === Human orthologs of target proteins === |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1Z2Z 1z2zA]
| | [[Target Human Ortholog Table]] contains the human orthologs and links to sequence and functional data. |
| <TD>2005-04-26
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=66361302 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=50727002 human protein]
| |
| <TD>661
| |
| <TD>24.11
| |
| <TD>419
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=50727002 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=50727002 PubMed]<br>
| |
| <TD>pseudouridylate synthase 7 homolog <br>
| |
|
| |
|
| <TR><TH>2
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2I5T 2i5tA]
| |
| <TD>2006-09-12
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=116668009 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=13129018 human protein]
| |
| <TD>188
| |
| <TD>97.86
| |
| <TD>187
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=13129018 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=13129018 PubMed]<br>
| |
| <TD>hypothetical protein LOC79017 <br>
| |
|
| |
|
| <TR><TH>3
| | === Mouse orthologs of target proteins === |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2HQX 2hqxA]
| | [[Target Mouse Ortholog Table]] contains the mouse orthologs and links to sequence and functional data. |
| <TD>2006-10-10
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=118137962 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=77404397 human protein]
| |
| <TD>910
| |
| <TD>99.19
| |
| <TD>246
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=77404397 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=77404397 PubMed]<br>
| |
| <TD>staphylococcal nuclease domain containing 1 <br>
| |
| | |
| <TR><TH>4
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1DFC 1dfcA]
| |
| <TD>2000-11-22
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=11513470 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=4507115 human protein]
| |
| <TD>493
| |
| <TD>100.00
| |
| <TD>493
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=4507115 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=4507115 PubMed]<br>
| |
| <TD>fascin 1 <br>
| |
| | |
| <TR><TH>5
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1PUJ 1pujA]
| |
| <TD>2003-07-08
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=33358156 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=93277113 human protein]
| |
| <TD>334
| |
| <TD>34.13
| |
| <TD>252
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=93277113 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=93277113 PubMed]<br>
| |
| <TD>GTP_binding protein <br>
| |
| | |
| <TR><TH>6
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1T9F 1t9fA]
| |
| <TD>2004-05-25
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=49259280 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=14141195 human protein]
| |
| <TD>211
| |
| <TD>54.29
| |
| <TD>175
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=14141195 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=14141195 PubMed]<br>
| |
| <TD>stromal cell-derived factor 2 precursor <br>
| |
| | |
| <TR><TH>7
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2F6R 2f6rA]
| |
| <TD>2005-12-27
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=85544617 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=46048207 human protein]
| |
| <TD>564
| |
| <TD>86.47
| |
| <TD>266
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=homologene&cmd=&term=NP_079509&go=Go HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=46048207 PubMed]<br>
| |
| <TD>Bifunctional coenzyme A synthase (CoA synthase)<br>
| |
| | |
| <TR><TH>8
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2DUL 2dulA]
| |
| <TD>2007-01-24
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=126030311 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=8923219 human protein]
| |
| <TD>659
| |
| <TD>29.91
| |
| <TD>351
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=8923219 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=8923219 PubMed]<br>
| |
| <TD>TRM1 tRNA methyltransferase 1 <br>
| |
| | |
| <TR><TH>9
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2IFU 2ifuA]
| |
| <TD>2006-10-10
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=118138356 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=4505331 human protein]
| |
| <TD>312
| |
| <TD>72.12
| |
| <TD>312
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=4505331 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=4505331 PubMed]<br>
| |
| <TD>N-ethylmaleimide-sensitive factor attachment protein, gamma <br>
| |
| | |
| <TR><TH>10
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1JZT 1jztA]
| |
| <TD>2001-09-26
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=15988207 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=91984773 human protein]
| |
| <TD>288
| |
| <TD>40.00
| |
| <TD>245
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=91984773 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=91984773 PubMed]<br>
| |
| <TD>apolipoprotein A-I binding protein precursor <br>
| |
| | |
| <TR><TH>11
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2F7F 2f7fA]
| |
| <TD>2005-12-13
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=85544633 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=40255089 human protein]
| |
| <TD>466
| |
| <TD>32.43
| |
| <TD>441
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=40255089 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=40255089 PubMed]<br>
| |
| <TD>nicotinate phosphoribosyltransferase domain containing 1 <br>
| |
| | |
| <TR><TH>12
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2HO4 2ho4A]
| |
| <TD>2006-08-15
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=114794442 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=14149777 human protein]
| |
| <TD>259
| |
| <TD>87.21
| |
| <TD>258
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=14149777 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=14149777 PubMed]<br>
| |
| <TD>haloacid dehalogenase-like hydrolase domain containing 2 <br>
| |
| | |
| <TR><TH>13
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1ZKD 1zkdA]
| |
| <TD>2005-05-10
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=67464609 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=21396487 human protein]
| |
| <TD>441
| |
| <TD>38.48
| |
| <TD>343
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=21396487 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=21396487 PubMed]<br>
| |
| <TD>hypothetical protein LOC55471 isoform 1 <br>
| |
| | |
| <TR><TH>14
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1PV1 1pv1A]
| |
| <TD>2004-11-30
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=56965881 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=33413400 human protein]
| |
| <TD>282
| |
| <TD>40.14
| |
| <TD>289
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=33413400 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=33413400 PubMed]<br>
| |
| <TD>esterase D/formylglutathione hydrolase <br>
| |
| | |
| <TR><TH>15
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=1WIX 1wixA]
| |
| <TD>2004-11-28
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=56966906 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=7705415 human protein]
| |
| <TD>728
| |
| <TD>88.89
| |
| <TD>153
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=7705415 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=7705415 PubMed]<br>
| |
| <TD>hook homolog 1 <br>
| |
| | |
| <TR><TH>16
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2OCE 2oceA]
| |
| <TD>2007-01-02
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=122921517 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=39841073 human protein]
| |
| <TD>995
| |
| <TD>33.42
| |
| <TD>781
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=39841073 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=39841073 PubMed]<br>
| |
| <TD>S1 RNA binding domain 1 <br>
| |
| | |
| <TR><TH>17
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2I9U 2i9uA]
| |
| <TD>2006-09-19
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=116668068 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=4758426 human protein]
| |
| <TD>454
| |
| <TD>37.61
| |
| <TD>444
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=4758426 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=4758426 PubMed]<br>
| |
| <TD>guanine deaminase <br>
| |
| | |
| <TR><TH>18
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2GFH 2gfhA]
| |
| <TD>2006-04-18
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=99032497 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=23308749 human protein]
| |
| <TD>248
| |
| <TD>94.33
| |
| <TD>247
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=23308749 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=23308749 PubMed]<br>
| |
| <TD>haloacid dehalogenase-like hydrolase domain containing 4 <br>
| |
| | |
| <TR><TH>19
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2FRN 2frnA]
| |
| <TD>2006-03-07
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=93279718 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=8923676 human protein]
| |
| <TD>448
| |
| <TD>36.04
| |
| <TD>222
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=8923676 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=8923676 PubMed]<br>
| |
| <TD>homolog of yeast tRNA methyltransferase <br>
| |
| | |
| <TR><TH>20
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2GNX 2gnxA]
| |
| <TD>2006-05-02
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=99032654 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=47458825 human protein]
| |
| <TD>445
| |
| <TD>91.30
| |
| <TD>322
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=47458825 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=47458825 PubMed]<br>
| |
| <TD>hypothetical protein LOC144577 <br>
| |
| | |
| <TR><TH>21
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2I2O 2i2oA]
| |
| <TD>2006-08-29
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=114794699 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=23510352 human protein]
| |
| <TD>256
| |
| <TD>63.10
| |
| <TD>252
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=23510352 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=23510352 PubMed]<br>
| |
| <TD>MIF4G domain containing <br>
| |
| | |
| <TR><TH>22
| |
| <TH>[http://www.rcsb.org/pdb/explore/explore.do?structureId=2CW9 2cw9A]
| |
| <TD>2005-12-17
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=85544427 protein]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=33636719 human protein]
| |
| <TD>452
| |
| <TD>96.26
| |
| <TD>187
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_homologene&from_uid=33636719 HomoloGene]
| |
| <TD>[http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?itool=protein_brief&db=protein&cmd=Display&dopt=protein_pubmed_refseq&from_uid=33636719 PubMed]<br>
| |
| <TD>translocase of inner mitochondrial membrane 44 <br>
| |
| | |
| </TABLE>
| |