ATP binding domain 4 Structures: Difference between revisions
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[[Image:PDBsum11.PNG|thumb|left|500px|'''Figure 6'''. The interaction of TRIS as ligand with 1RU8 via PDBsum]] | [[Image:PDBsum11.PNG|thumb|left|500px|'''Figure 6'''. The interaction of TRIS as ligand with 1RU8 via PDBsum]] | ||
Revision as of 07:22, 2 June 2009
General Properties
General information from PDB indicates that :
(a) 1RU8 is a putative n-type ATP pyrophosphatase isolated from Pyrococcus furiosus, expressed in Escherichia Coli.
(b) Is a member of clan PP-loop
(c) Resolution of 2.7 angstroms, with an r-value of 0.218.
(d) Ligand chemical component identified as TRS (2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL).
Surface Structure
Pymol Visualization
1RU8 is a dimer
Secondary Structure and Location of PP-loop
Potential Ligand Binding Interaction
Electrostatic Surface Potential
Structure Similarities
Z score , the statistical significance of the similarity between protein-of-interest and other neighbourhood proteins. The program optimizes a weighted sum of similarities of intramolecular distances.
Root Mean Square Distance (RMSD), root-mean-square deviation of C-alpha atoms in the least-squares superimposition of the structurally equivalent C-alpha atoms. RMSD is not optimized and is only reported for information.
lali, the number of structurally equivalent residues.
nres, or the total number of amino acids in the hit protein.
%id, percentage of identical amino acids over structurally equivalent residues.
Structure Alignment
1RU8 and 2NZ2
1RU8 and 3BL5
Surface Clefts
Surface Topography