Functional Analysis Of 1zkd: Difference between revisions
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No DNA-binding motifs (Helix-turn-helix) were found in the ProFunc search. | No DNA-binding motifs (Helix-turn-helix) were found in the ProFunc search. | ||
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Search against NCBI Protein Database for "S-adenosyl-L-methionine-dependent Methyltransferase" limited to RefSeq Sequences | |||
[[101 hits]] --> saved all as FASTA file |
Revision as of 05:36, 15 May 2007
Best scores for Methyltransferase: in SSM (Secondary Structure Matching), LIG(Ligand Template Matches) and REV (Reverse Template Matches)
Superfamily search against HMM library found motif similar to S-adenosyl-L-methionine-dependent methyltransferases (1g8a) which is a RNA binding protein:
http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl?pdbcode=1g8a
http://supfam.org/SUPERFAMILY/cgi-bin/scop.cgi?sunid=53335
No DNA-binding motifs (Helix-turn-helix) were found in the ProFunc search.
Search against NCBI Protein Database for "S-adenosyl-L-methionine-dependent Methyltransferase" limited to RefSeq Sequences
101 hits --> saved all as FASTA file