Bifunctional coenzyme A synthase (CoA synthase) Structure Main: Difference between revisions

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Coenzyme A atomic structure by bfactor (flexibility as denoted by crystalography; red is more flexible, blue is more structurally stable)
[[Image:COASYCoa atomic struct by bfactor.JPG]]
Coenzyme A atomic structure
[[Image:COASYCoa atomic struct.JPG]]
Coenzyme A ribbon structure with water molecules
[[Image:COASYWatermolecules.JPG]]
Coenzyme A ribbon structure by hydrophobicity
[[Image:COASYHydrophobicity.JPG]]
Coenzyme A ribbon structure by compound type
[[Image:COASYCompounds.JPG]]
Coenzyme A ribbon structure by conformation/structural type
[[Image:COASYConformationtypes.JPG]]
Binding Sites and types for AcetylCoenzymeA ligand to CoenzymeA
[[Image:COASYAcohydrophilicres.JPG]]
[[Image:COASYAcohydrophilic.JPG]]
[[Image:COASYAcohydrophobicres.JPG]]
[[Image:COASYAcohydrophobic.JPG]]
[[Image:COASYAcobridgedbondh.JPG]]
[[Image:COASYAcootherres.JPG]]
[[Image:COASYAcoother.JPG]]
Binding Sites and types for unknown ligand UNL to CoenzymeA
[[Image:COASYUnlhydrophilicres.JPG]]
[[Image:COASYUnlhydrophilic.JPG]]
[[Image:COASYUnlbridgedbondhres.JPG]]
[[Image:COASYUnlbridgedbondh.JPG]]
[[Image:COASYUnlotherres.JPG]]
[[Image:COASYUnlother.JPG]]
'''[[Bifunctional coenzyme A synthase (CoA synthase) Structure Dali |Dali Table For Z > 7]]'''
'''[[Bifunctional coenzyme A synthase (CoA synthase) Structure Dali |Dali Table For Z > 7]]'''



Revision as of 06:09, 15 May 2007

Coenzyme A atomic structure by bfactor (flexibility as denoted by crystalography; red is more flexible, blue is more structurally stable) COASYCoa atomic struct by bfactor.JPG

Coenzyme A atomic structure COASYCoa atomic struct.JPG

Coenzyme A ribbon structure with water molecules COASYWatermolecules.JPG

Coenzyme A ribbon structure by hydrophobicity COASYHydrophobicity.JPG

Coenzyme A ribbon structure by compound type COASYCompounds.JPG

Coenzyme A ribbon structure by conformation/structural type COASYConformationtypes.JPG

Binding Sites and types for AcetylCoenzymeA ligand to CoenzymeA

COASYAcohydrophilicres.JPG COASYAcohydrophilic.JPG COASYAcohydrophobicres.JPG COASYAcohydrophobic.JPG File:COASYAcobridgedbondh.JPG COASYAcootherres.JPG COASYAcoother.JPG

Binding Sites and types for unknown ligand UNL to CoenzymeA

COASYUnlhydrophilicres.JPG COASYUnlhydrophilic.JPG COASYUnlbridgedbondhres.JPG COASYUnlbridgedbondh.JPG COASYUnlotherres.JPG COASYUnlother.JPG

Dali Table For Z > 7

Highly Structurally Related Proteins:

Thymidylate Kinase: Nucleoside monophosphate kinase. Catalyses reversible phosphorylation transfer between ATP & TMP > ADP & TDP. Activates Anti HIV prodrugs.

Shikimate Kinase: Target for nontoxic antimicrobial agents, herbicides and parasite drugs. Absent in mammals. Catalyses reaction of phosphoryltransfer from ATP to shikimic acid.

Adenylate Kinase: Nucleoside monophosphate kinase. Essential for bacterial survival. AMP(bd) domain close to core of structure. Low catalytic activity compared to eukaryotic kinases (10 fold slower).

Dephospho-COA Kinase: Uses ATP as phosphate donor in phosphorylation of 3-hydroxy group of ribose (final stages of biosynthesis). ATP binds in p-loop (as it does in other kinases). COA binding site located at join of all 3 domains.

UMP/CMP kinase: Supplies precursors for nucleic acid synthesis. Catalyses UMP,CMP & dCMP into diphosphate form. Component of nucleoside analog prodrugs (AraC, gemcitabine & ddC).

Uridine-Cystidine Kinase: Catalyses phosphorylation of uridine & cystidine. Upon cystidine binding UCK becomes strictly specific to pyramidine ribnucleotides.



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