2gnx BlastP
Mouse Protein Subcellular Localization Database
BLAST Results
BLASTP 2.2.12 [Aug-07-2005]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query=
(323 letters)
Database: RIKEN IPS7 Protein Sequences
33,451 sequences; 15,064,402 total letters
Searching..................................................done
E = has experimental SCL data L = has literature-mined SCL data O = has SCL data from external resources P = has predicted SCL data
- denotes a protein that maps, with high-confidence, to a transcriptional unit that may exhibit variable membrane organization.
Score E
Sequences producing significant alignments: (bits) Value SCL Data Protein Class
PA157757.1|Unknown (protein for MGC:86070)\ 597 e-171 P Soluble, non-secreted protein PA157757.12|hypothetical protein\ 551 e-157 P Soluble, non-secreted protein PA157757.2|hypothetical protein\ 230 1e-60 P Type II membrane protein PA72427.1|neuronal apoptosis inhibitory protein\ 30 3.1 OP Soluble, non-secreted protein PA177473.19|RalGDS-like factor\ 29 5.3 OP Soluble, non-secreted protein PA82764.1|YY1 transcription factor\ 29 5.3 LOP Soluble, non-secreted protein
>PA157757.1|Unknown (protein for MGC:86070)\
Length = 445
Score = 597 bits (1538), Expect = e-171 Identities = 299/323 (92%), Positives = 299/323 (92%)
Query: 1 PHLSEQLCFFVQARXEIADFYEKXYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP 60
PHLSEQLCFFVQAR EIADFYEK YALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP
Sbjct: 123 PHLSEQLCFFVQARMEIADFYEKMYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP 182
Query: 61 LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG 120
LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG
Sbjct: 183 LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG 242
Query: 121 GQSQKAVQPPHXXXXXXXXXXXXXXXXXXYFHEALSRQTTASEXKALTAKANPDLFGKIS 180
GQSQKAVQPPH YFHEALSRQTTASE KALTAKANPDLFGKIS
Sbjct: 243 GQSQKAVQPPHLFLWLMKLKTMLLAKFSFYFHEALSRQTTASEMKALTAKANPDLFGKIS 302
Query: 181 SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVXHWP 240
SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPV HWP
Sbjct: 303 SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMHWP 362
Query: 241 NVIXIXTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFISF 300
NVI I TDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFISF
Sbjct: 363 NVIMIMTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFISF 422
Query: 301 LNELSLALKNPKVFASLKPGSKG 323
LNELSLALKNPKVFASLKPGSKG
Sbjct: 423 LNELSLALKNPKVFASLKPGSKG 445
>PA157757.12|hypothetical protein\
Length = 430
Score = 551 bits (1419), Expect = e-157 Identities = 275/299 (91%), Positives = 275/299 (91%)
Query: 1 PHLSEQLCFFVQARXEIADFYEKXYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP 60
PHLSEQLCFFVQAR EIADFYEK YALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP
Sbjct: 123 PHLSEQLCFFVQARMEIADFYEKMYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP 182
Query: 61 LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG 120
LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG
Sbjct: 183 LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG 242
Query: 121 GQSQKAVQPPHXXXXXXXXXXXXXXXXXXYFHEALSRQTTASEXKALTAKANPDLFGKIS 180
GQSQKAVQPPH YFHEALSRQTTASE KALTAKANPDLFGKIS
Sbjct: 243 GQSQKAVQPPHLFLWLMKLKTMLLAKFSFYFHEALSRQTTASEMKALTAKANPDLFGKIS 302
Query: 181 SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVXHWP 240
SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPV HWP
Sbjct: 303 SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMHWP 362
Query: 241 NVIXIXTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFIS 299
NVI I TDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFIS
Sbjct: 363 NVIMIVTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFIS 421
>PA157757.2|hypothetical protein\
Length = 261
Score = 230 bits (586), Expect = 1e-60 Identities = 116/135 (85%), Positives = 116/135 (85%)
Query: 21 YEKXYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSPLESSFQLEVGVLSHLLKAQA 80
YEK YALSTQKFINTEELVSTLDTILRKYSSRFHHPILSPLESSFQLEVGVLSHLLKAQA
Sbjct: 87 YEKMYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSPLESSFQLEVGVLSHLLKAQA 146
Query: 81 QISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFGGQSQKAVQPPHXXXXXXXXX 140
QISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFGGQSQKAVQPPH
Sbjct: 147 QISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFGGQSQKAVQPPHLFLWLMKLK 206
Query: 141 XXXXXXXXXYFHEAL 155
YFHEAL
Sbjct: 207 TMLLAKFSFYFHEAL 221
>PA72427.1|neuronal apoptosis inhibitory protein\
Length = 1447
Score = 29.6 bits (65), Expect = 3.1 Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 208 YHHPHSY---REAPKGVDQYPAVVS-LPSDRPVXHWPNVIXIXTDRASDLNSLEKVV--- 260
+H+ H + +E +D P V+S LP + P H + I T SDL+ L K++
Sbjct: 1139 FHNLHKFLGLKELCVRLDSKPDVLSVLPGEFPNLHHMEKLSIRTSTESDLSKLVKLIQNS 1198
Query: 261 ---HFYDDKVQSTYFLTRPEPHFTIVV----IFESKKSERDSHFISFLNEL 304
H + K FL+ EP T++ + E + S R ++F+N L
Sbjct: 1199 PNLHVFHLKCN---FLSNCEPLMTVLASCKKLREIEFSGRCFEAMTFVNIL 1246
>PA177473.19|RalGDS-like factor\
Length = 778
Score = 28.9 bits (63), Expect = 5.3 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 50 SSRFHHPI-----LSPLESSFQLEVGVLS----HLLKAQAQISEWKFLPSLVTLHNAHT 99
+SR + P+ L P SS +L G L HLL A+ ++ F P+L+ H A T
Sbjct: 70 TSRQYRPLDPLAPLPPPRSSRRLRAGTLEALVRHLLDARTAGADMMFTPALLATHRAFT 128
>PA82764.1|YY1 transcription factor\
Length = 414
Score = 28.9 bits (63), Expect = 5.3 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 199 GSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVXHWPNVIXIXT 247
G GH +HH H + P + P V P+ V H VI + T
Sbjct: 64 GGHGHAGHHHHHHHHHHHHPPMIALQPLVTDDPTQ--VHHHQEVILVQT 110
Database: RIKEN IPS7 Protein Sequences Posted date: Jul 19, 2005 2:33 PM Number of letters in database: 15,064,402 Number of sequences in database: 33,451
Lambda K H
0.318 0.132 0.390
Gapped Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,633,615
Number of Sequences: 33451
Number of extensions: 319325
Number of successful extensions: 769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 6
length of query: 323
length of database: 15,064,402
effective HSP length: 101
effective length of query: 222
effective length of database: 11,685,851
effective search space: 2594258922
effective search space used: 2594258922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)