Evolution for haloacid dehalogenase-like hydrolase domain containing 2
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BLAST searches with the whole nucleotide alignment was run for the human HDHD2 and also another for the first 100 nucleotides for conserved sequences. CLUSTALX and PHYLIP was used to contruct phyologenetic trees for determination of conservation and to aid in study of function.
Whole sequence alignment
Score E Sequences producing significant alignments: (bits) Value gb|AAH58177.1| Haloacid dehalogenase-like hydrolase domain conta... 462 e-128 ref|NP_084102.1| haloacid dehalogenase-like hydrolase domain con... 462 e-128 dbj|BAE28142.1| unnamed protein product [Mus musculus] 460 e-128 pdb|2HO4|A Chain A, Crystal Structure Of Protein From Mouse Mm.2... 453 e-126 ref|NP_001014173.1| hypothetical protein LOC361351 [Rattus norve... 446 e-124 ref|XP_537270.1| PREDICTED: similar to haloacid dehalogenase-lik... 437 e-121 ref|NP_001030194.1| haloacid dehalogenase-like hydrolase domain ... 426 e-118 ref|XP_001148863.1| PREDICTED: haloacid dehalogenase-like hydrol... 424 e-117 emb|CAH93402.1| hypothetical protein [Pongo pygmaeus] 424 e-117 ref|NP_115500.1| haloacid dehalogenase-like hydrolase domain con... 421 e-116 ref|XP_001086150.1| PREDICTED: similar to haloacid dehalogenase-... 418 e-115 ref|XP_001086254.1| PREDICTED: similar to haloacid dehalogenase-... 413 e-114 dbj|BAB22395.1| unnamed protein product [Mus musculus] 410 e-113 ref|XP_414700.2| PREDICTED: hypothetical protein [Gallus gallus] 390 e-107 gb|AAS66213.1| LRRG00122 [Rattus norvegicus] 389 e-107 ref|NP_001013491.1| hypothetical protein LOC541346 [Danio rerio]... 371 e-101
BLAST for firs 100 amino acids
Score E Sequences producing significant alignments: (Bits) Value gi|114794442|pdb|2HO4|A Chain A, Crystal Structure Of Protein... 175 8e-43 gi|34849757|gb|AAH58177.1| Haloacid dehalogenase-like hydrola... 174 2e-42 gi|21313310|ref|NP_084102.1| haloacid dehalogenase-like hydro... 172 4e-42 gi|74190684|dbj|BAE28142.1| unnamed protein product [Mus musculu 172 4e-42 gi|78042510|ref|NP_001030194.1| haloacid dehalogenase-like hy... 167 1e-40 gi|57089151|ref|XP_537270.1| PREDICTED: similar to haloacid d... 167 1e-40 gi|12833114|dbj|BAB22395.1| unnamed protein product [Mus musculu 167 2e-40 gi|75040931|sp|Q5R4B4|HDHD2_PONPY Haloacid dehalogenase-like ... 162 4e-39 gi|62079029|ref|NP_001014173.1| hypothetical protein LOC36135... 162 7e-39 gi|114673047|ref|XP_001148863.1| PREDICTED: haloacid dehaloge... 161 9e-39 gi|85861235|ref|NP_001034291.1| haloacid dehalogenase-like hy... 159 4e-38 gi|14149777|ref|NP_115500.1| haloacid dehalogenase-like hydro... 159 6e-38 gi|114673057|ref|XP_001148387.1| PREDICTED: haloacid dehaloge... 158 9e-38 gi|109122087|ref|XP_001086150.1| PREDICTED: similar to haloac... 155 8e-37 gi|109092050|ref|XP_001088800.1| PREDICTED: similar to haloac... 154 1e-36