2gnx BlastP: Difference between revisions

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BLASTP 2.2.12 [Aug-07-2005]
BLASTP 2.2.12 [Aug-07-2005]
 
BLASTP 2.2.16 (Mar-25-2007)


Reference:
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,  
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,  
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),  
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman  
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
(1997), "Gapped BLAST and PSI-BLAST: a new generation of  
programs", Nucleic Acids Res. 25:3389-3402.
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Query= (323 letters)
Reference:
 
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei
Database: RIKEN IPS7 Protein Sequences 33,451 sequences; 15,064,402 total letters
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
 
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
Searching..................................................done
protein database searches with composition-based statistics
 
and other refinements", Nucleic Acids Res. 29:2994-3005.
E = has experimental SCL data
L = has literature-mined SCL data
O = has SCL data from external resources
P = has predicted SCL data
 
"***" denotes a protein that maps, with high-confidence, to a transcriptional unit that may exhibit variable membrane organization.
 
 
                                                                Score      E
Sequences producing significant alignments:                     (bits)    Value    SCL Data   Protein Class
 
[[PA157757.1|Unknown (protein for MGC:86070)\]]                          597  e-171 P   Soluble, non-secreted protein


PA157757.12|hypothetical protein\                                    551  e-157 P   Soluble, non-secreted protein
RID: 6T33UXG4012


PA157757.2|hypothetical protein\                                      230  1e-60 P   Type II membrane protein


PA72427.1|neuronal apoptosis inhibitory protein\                      30  3.1  OP   Soluble, non-secreted protein
Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
          5,035,888 sequences; 1,742,339,864 total letters


PA177473.19|RalGDS-like factor\                                        29  5.3  OP   Soluble, non-secreted protein
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports


PA82764.1|YY1 transcription factor\                                    29  5.3  LOP   Soluble, non-secreted protein
Query= 
Length=445

Revision as of 23:50, 10 June 2007

BLASTP 2.2.12 [Aug-07-2005] BLASTP 2.2.16 (Mar-25-2007)

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.

Reference: Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.

RID: 6T33UXG4012


Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 

          5,035,888 sequences; 1,742,339,864 total letters

If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports

Query= Length=445

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