3b5q Structure: Difference between revisions

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== Materials & Methods==
1) Protein structural search on PyMOL, NCBI Entrez, InterPro and PDB databases  
1) Protein structural search on PyMOL, NCBI Entrez, InterPro and PDB databases  
* PDB code: 3b5q
* PDB code: 3b5q
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'''PDB'''
'''PDB'''


[[Image:3b5q image PDB.png|thumb|'''Figure 1.0''' Structure of 3b5q]]
[[Image:3b5q image PDB.png]]
 
 
 
 
 
 
 
 
 


'''Figure 1.0''' Structure of 3b5q




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'''Sequence'''
>gi|160286517|pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A Resolution
GXGLALCGAAAQAQEKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRA
ALWSGXXPHQTNVRSNSSEPVNTRLPENVPTLGSLFSESGYEAVHFGKTHDXGSLRGFKHKEPVAKPFTD
PEFPVNNDSFLDVGTCEDAVAYLSNPPKEPFICIADFQNPHNICGFIGENAGVHTDRPISGPLPELPDNF
DVEDWSNIPTPVQYICCSHRRXTQAAHWNEENYRHYIAAFQHYTKXVSKQVDSVLKALYSTPAGRNTIVV
IXADHGDGXASHRXVTKHISFYDEXTNVPFIFAGPGIKQQKKPVDHLLTQPTLDLLPTLCDLAGIAVPAE
KAGISLAPTLRGEKQKKSHPYVVSEWHSEYEYVTTPGRXVRGPRYKYTHYLEGNGEELYDXKKDPGERKN
LAKDPKYSKILAEHRALLDDYITRSKDDYRSLKVDADPRCRNHTPGYPSHEGPGAREILKRK
== Links ==
[http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=160286517 Arylsulfatase sequence]
[http://www.ncbi.nlm.nih.gov/pubmed/17558559?ordinalpos=2&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_RVDocSum Human sulfatases: a structural perspective to catalysis]
[http://www.ncbi.nlm.nih.gov/pubmed/10212197?ordinalpos=1&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DiscoveryPanel.Pubmed_Discovery_RA&linkpos=4&log$=relatedarticles&logdbfrom=pubmed  Amino acid residues forming the active site of arylsulfatase A. Role in catalytic activity and substrate binding]
[http://www.rcsb.org/pdb/explore/explore.do?structureId=3b5q Protein structure in PDB]


== Crystal Structure ==


'''Crystal Structure'''
[[Image:protein showing zinc pymol.png]]
[[Image:protein showing zinc pymol.png|300px|thumb]]





Latest revision as of 05:39, 5 June 2008

1) Protein structural search on PyMOL, NCBI Entrez, InterPro and PDB databases

  • PDB code: 3b5q

2) Comparing protein search with DALI server to identify similiar structures


Results

PDB

3b5q image PDB.png

Figure 1.0 Structure of 3b5q







Discussion

Crystal Structure

Protein showing zinc pymol.png








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