ATP binding domain 4 Structures: Difference between revisions

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== Secondary Structure and Location of P-loop (ATP binding site) ==
== Secondary Structure and Location of P-loop (ATP binding site) ==


[[Image:PDBsum chain.JPG|left|thumb|500px]]
[[Image:1RU8 conserved residues.PNG|left|thumb|500px]]
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== 1RU8 is a dimer ==
== 1RU8 is a dimer ==

Revision as of 14:48, 29 May 2009

Daniel's page in progress

Useful info

Here is some useful paper. check it out Link to Paper: http://pfam.sanger.ac.uk/family?acc=PF00764 Dali: http://ekhidna.biocenter.helsinki.fi/dali_server/results/20090512-0051-3897fbdf5431ad2e808e66dde1070610/index.html#alignment-7 Interpro: http://www.ebi.ac.uk/interpro/DisplayIproEntry?ac=IPR002761 (align 1RU8 & i. 11-16, 2NZ2 & i. 11-15)

SCOP Work

http://scop.mrc-lmb.cam.ac.uk/scop/data/scop.b.d.cj.c.b.bb.html

Pymol Work

Surface Structure

The three-dimensional structure of secondary structure 1RU8, as generated by PyMOL

Purple- Helix
Yellow - Sheet
Green- Loop































The three-dimensional surface structure of 1RU8, as generated by PyMOL

Note that there is a artificial ligand (purple) bound to the protein






























Secondary Structure and Location of P-loop (ATP binding site)

1RU8 conserved residues.PNG




















1RU8 is a dimer

1RU8 as 2 domain.png

Electrostatic Surface Potential

1ru8 electro surface.png


Alignment of 1RU8 and 2NZ2

Dali33.PNG



























1RU8 and 2NZ2

1ru8 n 2nz2.png




















1RU8 and 3BL5.png




















Surface Clefts

PDBsum cleft.PNG





















Surface Topography

Topology Diagram of 1RU8




















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