http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&feed=atom&action=history
Arylformamidase - Revision history
2024-03-29T02:20:44Z
Revision history for this page on the wiki
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http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&diff=10839&oldid=prev
Thomasparker at 03:29, 10 June 2008
2008-06-10T03:29:09Z
<p></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 03:29, 10 June 2008</td>
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Pretty protein.PNG|centre|framed|'''Figure 1.''' ''<del style="font-weight: bold; text-decoration: none;">Arylformamidase</del>'']]</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Pretty protein.PNG|centre|framed|'''Figure 1.''' ''<ins style="font-weight: bold; text-decoration: none;">2PBL</ins>'']]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>''by Basma Al Alaiwat, Sebastian Mynott and Thomas Parker''</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>''by Basma Al Alaiwat, Sebastian Mynott and Thomas Parker''</div></td></tr>
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Thomasparker
http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&diff=10695&oldid=prev
Thomasparker: /* Abstract */
2008-06-10T01:23:23Z
<p><span dir="auto"><span class="autocomment">Abstract</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 01:23, 10 June 2008</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>2PBL, initially annotated as an arylformamidase, was isolated from ''Silicibacter sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised 2PBL. It was found to contain conserved functional <del style="font-weight: bold; text-decoration: none;">groups that are </del>present in <del style="font-weight: bold; text-decoration: none;">a broad range </del>of <del style="font-weight: bold; text-decoration: none;">hydrolases in </del>many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases. Residues of a probable catalytic triad were identified as Ser137, His242 and Glu215. Further experimental characterisation of 2PBL is required to <del style="font-weight: bold; text-decoration: none;">further </del>understand its function.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>2PBL, initially annotated as an arylformamidase, was isolated from ''Silicibacter sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised 2PBL. It was found to contain <ins style="font-weight: bold; text-decoration: none;">a </ins>conserved functional <ins style="font-weight: bold; text-decoration: none;">region </ins>present in <ins style="font-weight: bold; text-decoration: none;">A/B-hydrolases </ins>of many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the <ins style="font-weight: bold; text-decoration: none;">prokaryotic </ins>HSL family of esterases. Residues of a probable catalytic triad were identified as Ser137, His242 and Glu215. Further experimental characterisation of 2PBL is required to <ins style="font-weight: bold; text-decoration: none;">better </ins>understand its function.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td></tr>
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Thomasparker
http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&diff=10465&oldid=prev
Thomasparker: /* Abstract */
2008-06-09T23:55:13Z
<p><span dir="auto"><span class="autocomment">Abstract</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 23:55, 9 June 2008</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">2pbl</del>, initially annotated as an arylformamidase, was isolated from ''Silicibacter sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised <del style="font-weight: bold; text-decoration: none;">2pbl</del>. It was found to contain <del style="font-weight: bold; text-decoration: none;">a </del>conserved functional groups that are present in a broad range of hydrolases in many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases. <del style="font-weight: bold; text-decoration: none;">Principal residues </del>of a probable catalytic triad were identified as Ser137, His242 and Glu215<del style="font-weight: bold; text-decoration: none;">. Although its specific function is still not known, 2pbl shares a high structural similarity with thermostable HSL esterases</del>. Further experimental characterisation of <del style="font-weight: bold; text-decoration: none;">2pbl </del>is <del style="font-weight: bold; text-decoration: none;">needed</del>.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">2PBL</ins>, initially annotated as an arylformamidase, was isolated from ''Silicibacter sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised <ins style="font-weight: bold; text-decoration: none;">2PBL</ins>. It was found to contain conserved functional groups that are present in a broad range of hydrolases in many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases. <ins style="font-weight: bold; text-decoration: none;">Residues </ins>of a probable catalytic triad were identified as Ser137, His242 and Glu215. Further experimental characterisation of <ins style="font-weight: bold; text-decoration: none;">2PBL </ins>is <ins style="font-weight: bold; text-decoration: none;">required to further understand its function</ins>.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td></tr>
</table>
Thomasparker
http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&diff=10374&oldid=prev
SebastianMynott: /* Abstract */
2008-06-09T22:46:43Z
<p><span dir="auto"><span class="autocomment">Abstract</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 22:46, 9 June 2008</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>2pbl, initially annotated as an arylformamidase, was isolated from ''<del style="font-weight: bold; text-decoration: none;">Silibacter </del>sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised 2pbl. It was found to contain a conserved functional <del style="font-weight: bold; text-decoration: none;">group </del>that <del style="font-weight: bold; text-decoration: none;">is </del>present in a broad range of hydrolases in many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases. <del style="font-weight: bold; text-decoration: none;">Probable </del>residues of a catalytic triad were identified as Ser137, His242 and Glu215. Although its specific function is still not known, 2pbl shares a high structural similarity with thermostable HSL esterases. Further experimental characterisation of 2pbl is needed.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>2pbl, initially annotated as an arylformamidase, was isolated from ''<ins style="font-weight: bold; text-decoration: none;">Silicibacter </ins>sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised 2pbl. It was found to contain a conserved functional <ins style="font-weight: bold; text-decoration: none;">groups </ins>that <ins style="font-weight: bold; text-decoration: none;">are </ins>present in a broad range of hydrolases in many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases. <ins style="font-weight: bold; text-decoration: none;">Principal </ins>residues of a <ins style="font-weight: bold; text-decoration: none;">probable </ins>catalytic triad were identified as Ser137, His242 and Glu215. Although its specific function is still not known, 2pbl shares a high structural similarity with thermostable HSL esterases. Further experimental characterisation of 2pbl is needed.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td></tr>
</table>
SebastianMynott
http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&diff=9570&oldid=prev
Thomasparker: /* Abstract */
2008-06-08T14:14:43Z
<p><span dir="auto"><span class="autocomment">Abstract</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 14:14, 8 June 2008</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>2pbl, initially annotated as an arylformamidase, was isolated from ''Silibacter sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised 2pbl. It was found to contain a conserved functional group that is present in a broad range of hydrolases in many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases. Probable residues of a catalytic triad were identified as Ser137, His242 and Glu215. Although its specific function is still not known, 2pbl shares a high structural similarity with thermostable HSL esterases. Further characterisation is needed.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>2pbl, initially annotated as an arylformamidase, was isolated from ''Silibacter sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised 2pbl. It was found to contain a conserved functional group that is present in a broad range of hydrolases in many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases. Probable residues of a catalytic triad were identified as Ser137, His242 and Glu215. Although its specific function is still not known, 2pbl shares a high structural similarity with thermostable HSL esterases. Further <ins style="font-weight: bold; text-decoration: none;">experimental </ins>characterisation <ins style="font-weight: bold; text-decoration: none;">of 2pbl </ins>is needed.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td></tr>
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Thomasparker
http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&diff=9569&oldid=prev
Thomasparker: /* Abstract */
2008-06-08T14:14:25Z
<p><span dir="auto"><span class="autocomment">Abstract</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 14:14, 8 June 2008</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>2pbl, initially annotated as an arylformamidase, was isolated from ''Silibacter sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised 2pbl. It was found to contain a conserved functional group that is present in a broad range of hydrolases in many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases. Probable residues of a catalytic triad were identified as Ser137, His242 and Glu215. Although <del style="font-weight: bold; text-decoration: none;">the </del>specific function is still not known, 2pbl shares a high structural <del style="font-weight: bold; text-decoration: none;">simlarity </del>with thermostable HSL esterases <del style="font-weight: bold; text-decoration: none;">and thus, may present novel industrial applications</del>.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>2pbl, initially annotated as an arylformamidase, was isolated from ''Silibacter sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised 2pbl. It was found to contain a conserved functional group that is present in a broad range of hydrolases in many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases. Probable residues of a catalytic triad were identified as Ser137, His242 and Glu215. Although <ins style="font-weight: bold; text-decoration: none;">its </ins>specific function is still not known, 2pbl shares a high structural <ins style="font-weight: bold; text-decoration: none;">similarity </ins>with thermostable HSL esterases<ins style="font-weight: bold; text-decoration: none;">. Further characterisation is needed</ins>.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td></tr>
</table>
Thomasparker
http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&diff=9129&oldid=prev
Thomasparker at 12:05, 7 June 2008
2008-06-07T12:05:04Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 12:05, 7 June 2008</td>
</tr><tr><td colspan="2" class="diff-lineno" id="mw-diff-left-l1">Line 1:</td>
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<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">'''We have to finish the paper before 12noon on Tuesday if you haven't checked your email! Want to meet before then? Monday sometime? Tuesday morning? My email - s4099302@student.uq.edu.au; Mobile - 0400799164. Thomas.'''</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Pretty protein.PNG|centre|framed|'''Figure 1.''' ''Arylformamidase'']]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Pretty protein.PNG|centre|framed|'''Figure 1.''' ''Arylformamidase'']]</div></td></tr>
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</table>
Thomasparker
http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&diff=8850&oldid=prev
Thomasparker: /* Abstract */
2008-06-05T08:22:51Z
<p><span dir="auto"><span class="autocomment">Abstract</span></span></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 08:22, 5 June 2008</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Abstract ==</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div>2pbl, initially annotated an arylformamidase, was isolated from ''Silibacter sp. TM1040'' and its structure determined by the JCSG. Based on <del style="font-weight: bold; text-decoration: none;">this structure, and using </del>structural, functional and evolutionary analysis, we have further characterised 2pbl. It was found to contain a conserved functional <del style="font-weight: bold; text-decoration: none;">region </del>that is present in a broad range of <del style="font-weight: bold; text-decoration: none;">proteins </del>in many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases <del style="font-weight: bold; text-decoration: none;">encompassing </del>a catalytic triad <del style="font-weight: bold; text-decoration: none;">of residues </del>Ser137, Glu215 <del style="font-weight: bold; text-decoration: none;">and His242</del>. Although the specific function is still not known, 2pbl may present novel industrial applications.</div></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div>2pbl, initially annotated <ins style="font-weight: bold; text-decoration: none;">as </ins>an arylformamidase, was isolated from ''Silibacter sp. TM1040'' and its structure determined by the JCSG. Based on structural, functional and evolutionary analysis, we have further characterised 2pbl. It was found to contain a conserved functional <ins style="font-weight: bold; text-decoration: none;">group </ins>that is present in a broad range of <ins style="font-weight: bold; text-decoration: none;">hydrolases </ins>in many taxonomic groups. Specifically, it was found to share similar structural and sequence characteristics of the HSL family of esterases<ins style="font-weight: bold; text-decoration: none;">. Probable residues of </ins>a catalytic triad <ins style="font-weight: bold; text-decoration: none;">were identified as </ins>Ser137, <ins style="font-weight: bold; text-decoration: none;">His242 and </ins>Glu215. Although the specific function is still not known, 2pbl <ins style="font-weight: bold; text-decoration: none;">shares a high structural simlarity with thermostable HSL esterases and thus, </ins>may present novel industrial applications.</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>== Contents ==</div></td></tr>
</table>
Thomasparker
http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&diff=8849&oldid=prev
Thomasparker at 08:17, 5 June 2008
2008-06-05T08:17:55Z
<p></p>
<table style="background-color: #fff; color: #202122;" data-mw="interface">
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 08:17, 5 June 2008</td>
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<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;">'''We have to finish the paper before 12noon on Tuesday if you haven't checked your email! Want to meet before then? Monday sometime? Tuesday morning? My email - s4099302@student.uq.edu.au; Mobile - 0400799164. Thomas.'''</ins></div></td></tr>
<tr><td colspan="2" class="diff-side-deleted"></td><td class="diff-marker" data-marker="+"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #a3d3ff; vertical-align: top; white-space: pre-wrap;"><div><ins style="font-weight: bold; text-decoration: none;"></ins></div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Pretty protein.PNG|centre|framed|'''Figure 1.''' ''Arylformamidase'']]</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Image:Pretty protein.PNG|centre|framed|'''Figure 1.''' ''Arylformamidase'']]</div></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
</table>
Thomasparker
http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=Arylformamidase&diff=8534&oldid=prev
Thomasparker: /* Presentations */
2008-06-03T11:27:00Z
<p><span dir="auto"><span class="autocomment">Presentations</span></span></p>
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<td colspan="2" style="background-color: #fff; color: #202122; text-align: center;">Revision as of 11:27, 3 June 2008</td>
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<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><br/></td></tr>
<tr><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Arylformamidase Function Slide 1 | Function]] - ''Thomas Parker''</div></td><td class="diff-marker"></td><td style="background-color: #f8f9fa; color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #eaecf0; vertical-align: top; white-space: pre-wrap;"><div>[[Arylformamidase Function Slide 1 | Function]] - ''Thomas Parker''</div></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;"></del></div></td><td colspan="2" class="diff-side-added"></td></tr>
<tr><td class="diff-marker" data-marker="−"></td><td style="color: #202122; font-size: 88%; border-style: solid; border-width: 1px 1px 1px 4px; border-radius: 0.33em; border-color: #ffe49c; vertical-align: top; white-space: pre-wrap;"><div><del style="font-weight: bold; text-decoration: none;">[[Arylformamidase Function | Function]] - ''Thomas Parker''</del></div></td><td colspan="2" class="diff-side-added"></td></tr>
</table>
Thomasparker