Chromosome 1 open reading frame 41 Evolution: Difference between revisions

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Sequences producing significant alignments:                       (Bits)  Value
[[Image:BLAST.png|centre|framed|'''Figure 1:''' BLAST result]]


gi|56966103|pdb|1TVG|A  Chain A, X-Ray Structure Of Human Pp25...  314    2e-84
gi|118343647|ref|NP_057210.2|  heat shock protein family B (sm...  289    5e-77
gi|55587102|ref|XP_513418.1|  PREDICTED: hypothetical protein ...  288    1e-76
gi|109004905|ref|XP_001113060.1|  PREDICTED: chromosome 1 open...  286    5e-76
gi|115497322|ref|NP_001069880.1|  chromosome 1 open reading fr...  267    2e-70
gi|196114870|ref|NP_001124474.1|  heat shock protein family B ...  256    3e-67
gi|110625938|ref|NP_082670.1|  heat shock protein family B (sm...  256    6e-67
gi|67460969|sp|Q9D6H2.1|HSB11_MOUSE  RecName: Full=Heat shock ...  254    2e-66
gi|119627123|gb|EAX06718.1|  chromosome 1 open reading frame 4...  222    7e-57
gi|126343386|ref|XP_001364227.1|  PREDICTED: hypothetical prot...  219    7e-56
gi|50751634|ref|XP_422488.1|  PREDICTED: similar to C1orf41 pr...  182    7e-45
gi|113205902|ref|NP_001037976.1|  novel protein similar to c1o...  169    7e-41
gi|5410280|gb|AAD43011.1|  HSPCO34 protein [Homo sapiens]          165    2e-39
gi|148237131|ref|NP_001087826.1|  MGC99123 protein [Xenopus la...  164    2e-39
gi|226443133|ref|NP_001140050.1|  Placental protein 25 [Salmo ...  154    3e-36 
gi|219420141|ref|XP_002207873.1|  hypothetical protein BRAFLDR...  140    4e-32
gi|123231815|emb|CAM16187.1|  novel protein [Danio rerio]          139    1e-31
gi|156405773|ref|XP_001640906.1|  predicted protein [Nematoste...  138    2e-31
gi|121583659|ref|NP_001073534.1|  heat shock protein family B ...  134    2e-30
gi|47215908|emb|CAG00383.1|  unnamed protein product [Tetraodo...  129    6e-29
gi|196009033|ref|XP_002114382.1|  hypothetical protein TRIADDR...  129    8e-29
gi|156632333|gb|ABU90455.1|  intraflagellar transport protein ...  103    6e-21
gi|159480874|ref|XP_001698507.1|  flagellar associated protein...  100    4e-20
gi|115681522|ref|XP_001201498.1|  PREDICTED: similar to C1orf4...  99.0    1e-19
gi|115956067|ref|XP_001185150.1|  PREDICTED: similar to C1orf4...  98.2    2e-19
gi|226516168|gb|ACO62163.1|  predicted protein [Micromonas sp....  88.6    1e-16


The above shows the result from BLASTP search. The sequences of these proteins are aligned to observe the conserved regions.
H-(2x)-W-(29x)-R-(2x)-S-(2x)-E residues critical for galactose binding site
 
 
[[Image:Msa16.png|centre|framed|'''Figure 2:''' Conserved region of alpha B domain.]]
 
 
[[Image:Msa17.png|centre|framed|'''Figure 3:''' Residues involved in binding of Ca2+ and possible binding site.]]
 
 
[[Image:Treecolour.png|centre|framed|'''Figure 4:''' Phylogenetic tree of c1orf41 with its homologues. Red is marine eukaryote, blue is amphibian and green is terrestrial eukaryotes.]]
 
 
[[Image:Tree.png|centre|framed|'''Figure 5:''' Phylogenetic tree with bootstrap values]]
 
 
[[Chromosome 1 open reading frame 41 Function|Next]]

Latest revision as of 06:26, 16 June 2009

Figure 1: BLAST result


H-(2x)-W-(29x)-R-(2x)-S-(2x)-E residues critical for galactose binding site


Figure 2: Conserved region of alpha B domain.


Figure 3: Residues involved in binding of Ca2+ and possible binding site.


Figure 4: Phylogenetic tree of c1orf41 with its homologues. Red is marine eukaryote, blue is amphibian and green is terrestrial eukaryotes.


Figure 5: Phylogenetic tree with bootstrap values


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