Chromosome 1 open reading frame 41 Evolution

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BLAST

BLAST.png

The above shows the result from BLASTP search. The sequences of these proteins are aligned to observe the conserved regions.


CLUSTALX

Multiple sequence alignment with all of the 27 sequences obtained from BLAST is shown below:


Platypus.png


The sequence for platypus seems unrelated to the other sequences. Therefore, the sequence was removed and the remaining 26 sequences was realigned.


MSA.png


Phylogenetic Tree

After obtaining the multiple sequence alignment, phylogenetic tree was construct based on the result from multiple sequence alignment.

Tree.png