Dali Analysis: Difference between revisions

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WARNING  pairs with Z<2.0 are structurally dissimilar
WARNING  pairs with Z<2.0 are structurally dissimilar


## SUMMARY: PDB/chain identifiers and structural alignment statistics
   No Chain raw-score Z-score %id lali rmsd  Description
   NR. STRID1 STRID2 Z   RMSD LALI LSEQ2 %IDE REVERS PERMUT NFRAG TOPO PROTEIN
  1 1pujA    3946.0   42.7 100  261 0.0  CONSERVED HYPOTHETICAL PROTEIN YLQF                                           
   1: 3367-A 1puj-A 42.7  0.0  261   261 100     0      0     1 S    SIGNALING PROTEIN conserved hypothetical protein ylqf
   2 1udxA      618.8    6.2  14  141 25.5 THE GTP-BINDING PROTEIN OBG                                                   
  2: 3367-A 1u0l-A 12.2 3.4 133   278  20     0     0    13 S    HYDROLASE probable gtpase engc (thermotoga maritima)
  3 1uadA     541.8     6.1   9  99  2.6  RAS-RELATED PROTEIN RAL-A                                                      
  3: 3367-A 1ctq-A  5.5 2.6   95  166  13     0      0     6 S    SIGNALING PROTEIN transforming protein p21H-RAS-1 frag
  4 1zbdA      553.7    6.1  12   99  2.8 RAB-3A                                                                         
  4: 3367-A 1ejj-A  5.3 5.8  159   508    9     0      0    24 S     ISOMERASE phosphoglycerate mutase (bacillus stearoth
   5 1g17A     526.0     5.9  18  95 2.5  RAS-RELATED PROTEIN SEC4                                                       
  5: 3367-A 1gpm-A 5.2 4.0  117   501    8      0      0    16 S    TRANSFERASE (GLUTAMINE AMIDOTRANSFERASE) gmp synthetas
  6 1c1yA     515.7     5.8  12  96 2.8  RAS-RELATED PROTEIN RAP-1A                                                     
  6: 3367-A 1efc-A  5.2  3.5  103   386  11      0      0     7 S    RNA BINDING PROTEIN elongation factor (eftu) biologica
   7 1kjzA     571.3     5.7  14 114 4.0  EIF2GAMMA                                                                     
  7: 3367-A 1hrk-A  5.1  4.2  116  359    5     0      0    17 S     LYASE ferrochelatase fragment (protoheme ferro-lyase,
   8 1oixA     510.9    5.4  11  94  2.6 RAS-RELATED PROTEIN RAB-11A                                                   
  8: 3367-A 1ni5-A 5.0  4.1 115  428    4     0      0   14 S    CELL CYCLE putative cell cycle protein mesj (escheric
  9 1ukvY      519.2    5.3  10  99  2.8 SECRETORY PATHWAY GDP DISSOCIATION INHIBITOR                                   
  9: 3367-A 1dpg-A 5.0  3.3 108   485    6     0      0    11 S    OXIDOREDUCTASE (CHOH(D) - NAD(P)) glucose 6-phosphate
10 1ijfA      535.8    5.3  13 103 3.6  ELONGATION FACTOR 1-ALPHA                                                     
11 1gpmA     481.7     5.2  7 117  4.0  GMP SYNTHETASE                                                                 
12 1hrkA      483.7     5.1   5  116 4.2  FERROCHELATASE                                                                 
13 1d5cA     474.4     5.1  10  92  2.6  RAB6 GTPASE                                                                   
  14 1ni5A      512.4    5.0   6 115  5.5  PUTATIVE CELL CYCLE PROTEIN MESJ                                               
  15 3rapS     484.1    5.0   9  92  2.6  G PROTEIN RAP2A                                                               
16 1gwnA     475.5    5.0 10  94  2.7  RHO-RELATED GTP-BINDING PROTEIN RHOE                                           
  17 1vg8A      479.0    5.0 11  106 3.9  RAS-RELATED PROTEIN RAB-7                                                     
  18 1cqxA      438.8    4.9   4  116  4.2  FLAVOHEMOPROTEIN                                                               
19 1mkyA     460.7    4.7  11 100  8.8  PROBABLE GTP-BINDING PROTEIN ENGA                                             
20 1fzqA      463.8    4.7  14  92  2.6 ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 3

Latest revision as of 04:48, 11 June 2007

FSSP FAMILIES OF STRUCTURALLY SIMILAR PROTEINS, VERSION 1.0 (Apr 1 1995) CREATED Tue May 15 06:16:53 BST 2007 for dali on s041-007.ebi.ac.uk METHOD Dali ver. 2.0: Holm, L., Sander, C. (1993) J.Mol.Biol. 233,123-138 DATABASE 9005 protein chains PDBID 3367-A HEADER COMPND SOURCE AUTHOR SEQLENGTH 261 NALIGN 364 WARNING pairs with Z<2.0 are structurally dissimilar 

 No Chain  raw-score Z-score %id lali rmsd  Description
 1 1pujA     3946.0    42.7 100  261  0.0  CONSERVED HYPOTHETICAL PROTEIN YLQF                                             
 2 1udxA      618.8     6.2  14  141 25.5  THE GTP-BINDING PROTEIN OBG                                                     
 3 1uadA      541.8     6.1   9   99  2.6  RAS-RELATED PROTEIN RAL-A                                                       
 4 1zbdA      553.7     6.1  12   99  2.8  RAB-3A                                                                          
 5 1g17A      526.0     5.9  18   95  2.5  RAS-RELATED PROTEIN SEC4                                                        
 6 1c1yA      515.7     5.8  12   96  2.8  RAS-RELATED PROTEIN RAP-1A                                                      
 7 1kjzA      571.3     5.7  14  114  4.0  EIF2GAMMA                                                                       
 8 1oixA      510.9     5.4  11   94  2.6  RAS-RELATED PROTEIN RAB-11A                                                     
 9 1ukvY      519.2     5.3  10   99  2.8  SECRETORY PATHWAY GDP DISSOCIATION INHIBITOR                                    
10 1ijfA      535.8     5.3  13  103  3.6  ELONGATION FACTOR 1-ALPHA                                                       
11 1gpmA      481.7     5.2   7  117  4.0  GMP SYNTHETASE                                                                  
12 1hrkA      483.7     5.1   5  116  4.2  FERROCHELATASE                                                                  
13 1d5cA      474.4     5.1  10   92  2.6  RAB6 GTPASE                                                                     
14 1ni5A      512.4     5.0   6  115  5.5  PUTATIVE CELL CYCLE PROTEIN MESJ                                                
15 3rapS      484.1     5.0   9   92  2.6  G PROTEIN RAP2A                                                                 
16 1gwnA      475.5     5.0  10   94  2.7  RHO-RELATED GTP-BINDING PROTEIN RHOE                                            
17 1vg8A      479.0     5.0  11  106  3.9  RAS-RELATED PROTEIN RAB-7                                                       
18 1cqxA      438.8     4.9   4  116  4.2  FLAVOHEMOPROTEIN                                                                
19 1mkyA      460.7     4.7  11  100  8.8  PROBABLE GTP-BINDING PROTEIN ENGA                                               
20 1fzqA      463.8     4.7  14   92  2.6  ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 3
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