Elizabeth Skippington: Difference between revisions

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PIC Server [http://compbio.chemistry.uq.edu.au/picserver/home.py]
PIC Server [http://compbio.chemistry.uq.edu.au/picserver/home.py]
= Literature =
==LGT==
Jain R, Rivera MC, Lake JA: '''Horizontal gene transfer among genomes: the complexity hypothesis.''' Proc. Natl. Acad. Sci. 1999 96:3801-3806 [http://www.pnas.org/cgi/reprint/96/7/3801.pdf]
Aris-Brosou S: '''Determinants of Adaptive Evolution at the Molecular Level: the Extended Complexity Hypothesis''' Molecular Biology and Evolution 2005 22(2):200-209 [http://mbe.oxfordjournals.org/cgi/content/abstract/22/2/200]
Wellner A and Lurie MN: '''Complexity, connectivity, and duplicability as barriers to lateral gene transfer.''' Genome Biology 2007, 8:R156  [http://genomebiology.com/content/pdf/gb-2007-8-8-r156.pdf]
Davids W, Zhang Z: '''The impact of horizontal gene tranfer in shaping operons and protein interaction networks- direct evidence of preferential attachment.''' BMC Evoutionary Biology 2008, 8:23 [http://www.biomedcentral.com/content/pdf/1471-2148-8-23.pdf]
===LGT and regulatory networks===
McAdams HH, Srinivasan B & Arkin AP: '''The evolution of genetic regulatory systems in bacteria'''
Nature Reviews Genetics 2004, 5:169-178 [http://www.nature.com/nrg/journal/v5/n3/execsumm/nrg1292.html]
Lercher MJ, and Pál C: '''Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years. '''Molecular Biology and Evolution 2008, 25(3):559-567 [http://mbe.oxfordjournals.org/cgi/reprint/25/3/559]
Price MN, Dehal PS, Arkin AP:  '''Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli.''' Genome Biol 2008, 9(1):R4 [http://genomebiology.com/content/pdf/gb-2008-9-1-r4.pdf]
===LGT and metabolic networks===
Eisenberg E, Levanon EY: '''Preferential attachment in the protein network evolution.''' Phys Rev Lett 2003, 91(13):138701 [http://prola.aps.org/pdf/PRL/v91/i13/e138701]
Light S, Kraulis P and Elofsson, A: '''Preferential attachment in the evolution of metabolic networks.''' BMC Genomics 2005, 6:159 [http://www.biomedcentral.com/1471-2164/6/159]
===LGT and operon formation===
Lawrence JG & Roth JR: '''Selfish operons: Horizontal transfer may drive the evolution of gene clusters.''' Genetics. 1996 143(4): 1843–1860. [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8844169]
Lawrence JG: '''Selfish operons and speciation by gene transfer.''' Trends in Microbiology 1997  5(9):355-359
[http://www.sciencedirect.com/science?_ob=ArticleURL&_udi=B6TD0-3RHMRWB-C&_user=331728&_rdoc=1&_fmt=&_orig=search&_sort=d&view=c&_acct=C000016898&_version=1&_urlVersion=0&_userid=331728&md5=36adfe2920ddd3819c2b9be950532e6b]
Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV: '''Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ.''' Genome Biol. 2003; 4(9): R55 [http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=12952534]
Homma K, Fukuchi S, Nakamura Y, Gojobori T, Nishikawa K: '''Gene Cluster Analysis Method Identifies Horizontally Transferred Genes with High Reliability and Indicates that They Provide the Main Mechanism of Operon Gain in 8 Species of {gamma}-Proteobacteria.''' Molecular Biology and Evolution 2007 24(3):805-813 [http://mbe.oxfordjournals.org/cgi/reprint/24/3/805]

Latest revision as of 11:53, 10 July 2011

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