Elizabeth Skippington: Difference between revisions
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Jain R, Rivera MC, Lake JA: '''Horizontal gene transfer among genomes: the complexity hypothesis.''' Proc. Natl. Acad. Sci. 1999 96:3801-3806 [http://www.pnas.org/cgi/reprint/96/7/3801.pdf] | |||
Wellner A and Lurie MN: '''Complexity, connectivity, and duplicability as barriers to lateral gene transfer.''' Genome Biology 2007, 8:R156 [http://genomebiology.com/content/pdf/gb-2007-8-8-r156.pdf] | |||
Davids W, Zhang Z: '''The impact of horizontal gene tranfer in shaping operons and protein interaction networks- direct evidence of preferential attachment.''' BMC Evoutionary Biology 2008, 8:23 [http://www.biomedcentral.com/content/pdf/1471-2148-8-23.pdf] | Davids W, Zhang Z: '''The impact of horizontal gene tranfer in shaping operons and protein interaction networks- direct evidence of preferential attachment.''' BMC Evoutionary Biology 2008, 8:23 [http://www.biomedcentral.com/content/pdf/1471-2148-8-23.pdf] | ||
Revision as of 07:21, 4 April 2008
PIC Server [1]
Literature
LGT
Jain R, Rivera MC, Lake JA: Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl. Acad. Sci. 1999 96:3801-3806 [2]
Wellner A and Lurie MN: Complexity, connectivity, and duplicability as barriers to lateral gene transfer. Genome Biology 2007, 8:R156 [3]
Davids W, Zhang Z: The impact of horizontal gene tranfer in shaping operons and protein interaction networks- direct evidence of preferential attachment. BMC Evoutionary Biology 2008, 8:23 [4]
LGT and regulatory networks
Lercher MJ, and Pál C: Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years. Molecular Biology and Evolution 2008, 25(3):559-567 [5]
Price MN, Dehal PS, Arkin AP: Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli. Genome Biol 2008, 9(1):R4 [6]
LGT and metabolic networks
Eisenberg E, Levanon EY: Preferential attachment in the protein network evolution. Phys Rev Lett 2003, 91(13):138701 [7]
Light S, Kraulis P and Elofsson, A: Preferential attachment in the evolution of metabolic networks. BMC Genomics 2005, 6:159 [8]
LGT and operon formation
Lawrence JG & Roth JR: Selfish operons: Horizontal transfer may drive the evolution of gene clusters. Genetics. 1996 143(4): 1843–1860. [9]
Lawrence JG: Selfish operons and speciation by gene transfer. Trends in Microbiology 1997 5(9):355-359 [10]
Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV: Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. Genome Biol. 2003; 4(9): R55 [11]
Homma K, Fukuchi S, Nakamura Y, Gojobori T, Nishikawa K: Gene Cluster Analysis Method Identifies Horizontally Transferred Genes with High Reliability and Indicates that They Provide the Main Mechanism of Operon Gain in 8 Species of {gamma}-Proteobacteria. Molecular Biology and Evolution 2007 24(3):805-813 [12]
