Elizabeth Skippington: Difference between revisions
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===Networks=== | ===Networks=== | ||
Oltvai ZN and Barabási AL '''SYSTEMS BIOLOGY: Life's Complexity Pyramid''' Science, 2002 298(5594):763-764 [http://www.sciencemag.org/cgi/content/full/298/5594/763] | |||
Barabasi AL, Oltvai ZN: '''Network biology: understanding the cell's functional organization''' Nature Reviews Genetics, 2004 5: | Barabasi AL, Oltvai ZN: '''Network biology: understanding the cell's functional organization''' Nature Reviews Genetics, 2004 5:101-113 [http://hydra.icgeb.trieste.it/~pongor/biophys-homepage/ALB/Network-Biology.pdf] | ||
Revision as of 00:00, 7 April 2008
PIC Server [1]
Literature
LGT
Jain R, Rivera MC, Lake JA: Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl. Acad. Sci. 1999 96:3801-3806 [2]
Aris-Brosou S: Determinants of Adaptive Evolution at the Molecular Level: the Extended Complexity Hypothesis Molecular Biology and Evolution 2005 22(2):200-209 [3]
Wellner A and Lurie MN: Complexity, connectivity, and duplicability as barriers to lateral gene transfer. Genome Biology 2007, 8:R156 [4]
Davids W, Zhang Z: The impact of horizontal gene tranfer in shaping operons and protein interaction networks- direct evidence of preferential attachment. BMC Evoutionary Biology 2008, 8:23 [5]
LGT and regulatory networks
McAdams HH, Srinivasan B & Arkin AP: The evolution of genetic regulatory systems in bacteria Nature Reviews Genetics 2004, 5:169-178 [6]
Lercher MJ, and Pál C: Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years. Molecular Biology and Evolution 2008, 25(3):559-567 [7]
Price MN, Dehal PS, Arkin AP: Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli. Genome Biol 2008, 9(1):R4 [8]
LGT and metabolic networks
Eisenberg E, Levanon EY: Preferential attachment in the protein network evolution. Phys Rev Lett 2003, 91(13):138701 [9]
Light S, Kraulis P and Elofsson, A: Preferential attachment in the evolution of metabolic networks. BMC Genomics 2005, 6:159 [10]
LGT and operon formation
Lawrence JG & Roth JR: Selfish operons: Horizontal transfer may drive the evolution of gene clusters. Genetics. 1996 143(4): 1843–1860. [11]
Lawrence JG: Selfish operons and speciation by gene transfer. Trends in Microbiology 1997 5(9):355-359 [12]
Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV: Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. Genome Biol. 2003; 4(9): R55 [13]
Homma K, Fukuchi S, Nakamura Y, Gojobori T, Nishikawa K: Gene Cluster Analysis Method Identifies Horizontally Transferred Genes with High Reliability and Indicates that They Provide the Main Mechanism of Operon Gain in 8 Species of {gamma}-Proteobacteria. Molecular Biology and Evolution 2007 24(3):805-813 [14]
Networks
Oltvai ZN and Barabási AL SYSTEMS BIOLOGY: Life's Complexity Pyramid Science, 2002 298(5594):763-764 [15]
Barabasi AL, Oltvai ZN: Network biology: understanding the cell's functional organization Nature Reviews Genetics, 2004 5:101-113 [16]
