Elizabeth Skippington: Difference between revisions

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Light S, Kraulis P and Elofsson, A: '''Preferential attachment in the evolution of metabolic networks.''' BMC Genomics 2005, 6:159 [http://www.biomedcentral.com/1471-2164/6/159]
Light S, Kraulis P and Elofsson, A: '''Preferential attachment in the evolution of metabolic networks.''' BMC Genomics 2005, 6:159 [http://www.biomedcentral.com/1471-2164/6/159]


Pál C, Papp B, Lercher MJ: '''Adaptive evolution of bacterial metabolic networks by horizontal gene transfer''' Nature Genetics 2005 37:1372 - 1375 [http://www.nature.com/ng/journal/v37/n12/pdf/ng1686.pdf]


===LGT and operon formation===
===LGT and operon formation===

Revision as of 00:07, 7 April 2008

PIC Server [1]


Literature

LGT

Jain R, Rivera MC, Lake JA: Horizontal gene transfer among genomes: the complexity hypothesis. Proc. Natl. Acad. Sci. 1999 96:3801-3806 [2]

Aris-Brosou S: Determinants of Adaptive Evolution at the Molecular Level: the Extended Complexity Hypothesis Molecular Biology and Evolution 2005 22(2):200-209 [3]

Wellner A and Lurie MN: Complexity, connectivity, and duplicability as barriers to lateral gene transfer. Genome Biology 2007, 8:R156 [4]

Davids W, Zhang Z: The impact of horizontal gene tranfer in shaping operons and protein interaction networks- direct evidence of preferential attachment. BMC Evoutionary Biology 2008, 8:23 [5]


LGT and regulatory networks

McAdams HH, Srinivasan B & Arkin AP: The evolution of genetic regulatory systems in bacteria Nature Reviews Genetics 2004, 5:169-178 [6]

Lercher MJ, and Pál C: Integration of Horizontally Transferred Genes into Regulatory Interaction Networks Takes Many Million Years. Molecular Biology and Evolution 2008, 25(3):559-567 [7]

Price MN, Dehal PS, Arkin AP: Horizontal gene transfer and the evolution of transcriptional regulation in Escherichia coli. Genome Biol 2008, 9(1):R4 [8]


LGT and metabolic networks

Eisenberg E, Levanon EY: Preferential attachment in the protein network evolution. Phys Rev Lett 2003, 91(13):138701 [9]

Light S, Kraulis P and Elofsson, A: Preferential attachment in the evolution of metabolic networks. BMC Genomics 2005, 6:159 [10]

Pál C, Papp B, Lercher MJ: Adaptive evolution of bacterial metabolic networks by horizontal gene transfer Nature Genetics 2005 37:1372 - 1375 [11]

LGT and operon formation

Lawrence JG & Roth JR: Selfish operons: Horizontal transfer may drive the evolution of gene clusters. Genetics. 1996 143(4): 1843–1860. [12]

Lawrence JG: Selfish operons and speciation by gene transfer. Trends in Microbiology 1997 5(9):355-359 [13]

Omelchenko MV, Makarova KS, Wolf YI, Rogozin IB, Koonin EV: Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ. Genome Biol. 2003; 4(9): R55 [14]

Homma K, Fukuchi S, Nakamura Y, Gojobori T, Nishikawa K: Gene Cluster Analysis Method Identifies Horizontally Transferred Genes with High Reliability and Indicates that They Provide the Main Mechanism of Operon Gain in 8 Species of {gamma}-Proteobacteria. Molecular Biology and Evolution 2007 24(3):805-813 [15]


Networks

Oltvai ZN and Barabási AL SYSTEMS BIOLOGY: Life's Complexity Pyramid Science, 2002 298(5594):763-764 [16]

Barabasi AL, Oltvai ZN: Network biology: understanding the cell's functional organization Nature Reviews Genetics, 2004 5:101-113 [17]