Evolutionary Tree
BACKGROUND
-> This is the cladogram treeview of SNAP-gamma protein. However, this view is not suitable enough to represent the evolutionary gap between species.
In detecting evolunationary tree, BLAST was used to searching homologous sequence and to obtain the Batch Entrez IDs of the homologous gene. In addition, Clustal X was used to align the sequence specifically by using multiple alignment method. Phylogenetic analysis was conducted using treeview program follows with editing the tree to adding the boostrap value.
FINAL TREE ANALYSIS
-> Evolutionary analysis of the tree with radial view (for professional viewer) ]
Legends:
- Red-dotted sign means boostrap value more than 75.00 or 75%
- any number (in red) located near branching tree indicated boostrap value of the branching tree
- Line colours:
- Green Line : The species belongs to Plants group - Brown Line : Amoeba group - Purple : Parasite type - Pink Line : The species belongs to Insects Group - Light Green Line: Worms Group - Dark Blue Line : Invertebrate - Red Line : Vertebrate
Other version: Evolutionary analysis of the tree with radial view (for non-professional or common viewer)
IN DEPTH UNDERSTANDING
SNAP-gamma protein evolutionary tree mostly contains more than 75% boostrapvalue. Thus, red dot signs was assign to represent more than 75% boostrap value. The value was indicated the degree confidence of the branching tree. As an example: 80.0 boostrap value means we are 80% confidence about the splitting tree path into specific species. On the other hand, low boostrap value represent low confidence of the path of branching tree.
Two or more species which is closely related was assign with same color of the branch tree.
OTHER ATTRIBUTES
List IDs use as an batch entrez input
