Function for haloacid dehalogenase-like hydrolase domain containing 2

Haloacid dehalogenase-like hydrolase domain containing 2 (2HO4:A,B)

Where's does this name come from?

Hydolase indicates it's main molecular function, hydrolase activity. /Link

Definition of hydrolase activity:

Catalysis of the hydrolysis of various bonds

e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc.

Hydrolase is the systematic name for any enzyme of EC class 3.

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The name Domain containing 2 illustrate it has 2 domains

Sequence and Secondary Structure /Link

From the above diagram, we see 2 domains color in blue and purple showed separately.

Type: polypeptide(L)

Length: 259 residues

Secondary Structure: 44% helical (14 helices; 123 residues) 17% beta sheet (12 strands; 48 residues)

2HO4Aa: pdp domain 2HO4Aa (in purple)

2HO4Ab: pdp domain 2HO4Ab (in blue)

But this does not conclude all it's function

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Protein Data Bank (PDB)

Ligands and Prosthetic Groups

ID	Name Chemical	Formula	Weight Ligand	Link
PO4	Phosphate Ion	O4 P 3-	94.971	/View
MG	Magnesium Ion	Mg 2+	24.305	/View
MSE	Selenomethionine	C5 H11 N O2 Se	196.107	/View

PBD Biology and Chemistry Report /Link

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Mouse Genome Informatics(MGI)

Gene Ontology Classifications /Link

We found 5 Category of Function or Process with evidence.

GO Annotations in Tabular Form

Category	Classification	Term Evidence	Inferred From	Ref(s)
Molecular	Function catalytic activity	IEA	InterPro:IPR005834	J:72247
Molecular Function	hydrolase activity	IEA	InterPro:IPR006357	J:72247
Molecular Function	hydrolase activity	IEA	SP_KW:KW-0378	J:60000
Molecular Function	magnesium ion binding	IEA	SP_KW:KW-0460	J:60000
Biological Process	metabolic process	IEA	InterPro:IPR005834,InterPro:IPR006357	J:72247

Gene Ontology Evidence Code Abbreviations:

  IC Inferred by curator 
  IDA Inferred from direct assay 
  IEA Inferred from electronic annotation 
  IGI Inferred from genetic interaction 
  IMP Inferred from mutant phenotype 
  IPI Inferred from physical interaction 
  ISS Inferred from sequence or structural similarity 
  NAS Non-traceable author statement 
  ND No biological data available 
  RCA Reviewed computational analysis 
  TAS Traceable author statement 

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So where's the evidence from?

The evidence was done by Mammalian Orthology Load, which information was derived from Homologene National Center for Biotechnology Information. This polymer was reviewed in 2004 and record with J Number: J:90500.

The Mammalian Orthology Query Results shows the Orthology Evidence were used both Amino acid sequence comparison and NT Nucleotide sequence comparison. With species of human, mouse(laboratory), rat, chimpanzee and dog(domestic) all contain this polymer.

/Link

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What about it's functional partners

From /STRING uses orthology information from the excellent COG database, we predicted it's functional partners.

From the result of occurrence we discover KIAA0423 annotation, which is still not available (1723 aa) is it best suit predicted Functional Partners. /Link

The above result shows using protein sequence to compare difference species and their .

e.g. Pan troglodytes and Homo sapiens are two species highly conservatity

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How does hydrolase activity?

The HAD (haloacid dehalogenase) superfamily of hydrolases contains enzymes such as L-2-haloacid dehalogenase, epoxide hydrolase and a variety of phosphatases

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Genomics Institute of the Novartis Research Foundation

[1]

/ Gene Ontology Classifications

/ PDB sum

/ Mammalian Orthology Proteins

PO4

MG

MSE