Gaf Domain on C-Terminal

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USR1:_(size=344) vs USR2:A(size=180)

Structure Alignment Rmsd = 3.3Å Z-Score = 4.4 Sequence identity = 6.8% Aligned/gap positions = 117/76 Sequence alignment based on structure alignment. Sequence alignment based on structure alignment. Position numbers according to sequence (starting from 1) and according to PDB are given as SSSS/PPPP, SSSS - sequence, PPPP - PDB. USR1:_ - USR2:A - MOL_ID: 1; MOLECULE: GAF; CHAIN: A, B; ENGINEERED: YES 



 USR1:_  162/163   TMLLAKFSFYFHEALSRQTTASEMKALTAKANPDLFGKISSFIRK--YDAANVSLIFDN-
 USR2:A   36/37    SDGQVNWVCNLS---------------------NASSLIWHAYKSLAVDINWAGFYVTQA



 USR1:_  219/220   -RGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMHW----PNVIMIMTDRASD
 USR2:A   75/76    SEEN----------------------TLILGPFQGKVACQ--MIQFGKGVCGTAASTK--



 USR1:_  274/275   LNSLEKVVHFYDDKV----------QSTYFLTRPEP-----HFTIVVIFESKKSERDSHF
 USR2:A  109/110   -----ETQIVPDVNKYPGHIACDGETKSEIVVPIISNDGKTLGVIDIDCLDYEGFDHV-D



 USR1:_  319/320   ISFLNELSLALKN
 USR2:A  163/164   KEFLEKLAKLINK

View Results: Download alignment as a PDB file

Quick view of structure alignment (using Rasmol)

Detailed analysis of alignment (using Compare3D Java applet) Notes: (i) On some platforms (IntermnetExplorer7) Compare3D starts from the second click (ii) Compare3D may not work with some versions of InternetExplorer or across the firewall

View of structure alignment using Protein Explorer

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