Hypothetical protein Results

Abstract | Introduction | Method | Results | Discussion | Conclusion | References

Evolution

Sequences gathered for MSA (including query):

Agrobacterium tumefaciens | hypothetical protein Atu2016 [Agrobacterium tumefaciens str. C58] MLKNIDPALNADVLHALRAMGHGDTLVISDTNFPSDSVARQTTVGKVLHIDNVSAARAMKAILSVLPLDT PLQPSVGRMEVMGAPDQLEPVQVEVQQEIDAAEGKSAPMYGIERFAFYEKAKQAYCVITTGETRFYGCFL LTKGVIPPK Sinorhizobium medicae | RbsD or FucU transport [Sinorhizobium medicae WSM419] MLKNIDPALNADVLHALRSMGHGDTLVISDTNFPSDAIARQTTLGKLLHIDNVSAARAAKAILSVLPLDT PLQPSAGRMEVMGAPDEVPGVQREVQAEIDRAEGKPAPMYGIERFAFYEEAKKAYCVITTGETRFYGCFL FTKGVVPPETI Rhizobium leguminosarum | putative fucose binding protein [Rhizobium leguminosarum bv. viciae 3841] MLKNIDPALNADVLHALRSMGHGDTVVVSDTNFPSDSIARQTVLGKLLRIDNVSAARAIEAILSVMPLDT PLQPSAGRMEIMGAPDEIPPVQQEVQAVIDGAEGKPAPMYGIERFAFYEEAKKAYCVITTGENRFYGCFL FTKGVIPPEAV Oceanicola granulosus | FucU, fucose operon fucU protein [Oceanicola granulosus HTCC2516] MLRNIPPILSPDLLHALAAMGHGDDIVIADANFPGTSMGRRLLRLDGISATDTLEAVLGLLPLDSFVPDP ALVMEVVDDPDAVPEIVADFQTIIDATADHPAKVARLERFAFYERAKEAFAVIQTGETRLYGNIILKKGV IG Sagittula stellata E-37| fucose dissimilation pathway protein [Sagittula stellata E-37] MLRNIPAILSPDILHTLRAMGHGDILAITDANFPAYSMGCKVHRLDGIPATDVLDAVLTLMPLDSFIPDP AYTMQVVDDPNAVPEIVARFQDIIDRVSDNPTKIITAERFAFYDRAKSSFAVIQTGETRLYGNILLTKGI IPPG Tolumonas auensis | RbsD or FucU transport [Tolumonas auensis DSM 9187] MLKNIPPFMDAELLWILAAMGHGDELAVVDRNFPARSIANETTSGKLVSLGGMDAPTCISGILELMPLDN FVPTPVGWMDPVDQPGTILSVHHDVLAACKKAENAEVGHYVIERFDYYAAAKKCFAVVQTSENRPYGCFI LKKGVVFD Brucella melitensis | fucose operon FUCU protein [Brucella melitensis 16M] MLKNINPLLTGSLLAILADMGHGDDLVIVDANYPAQAAGVPVLDFPGISATQVAEAVLSLLPLDDFVDRP AAVMQAPNEMPAIFKEFEAVIEKAEGRKIPVEPIERFAFYDRARGAFAIIRTGEKRLYGNIIFKKGVIRS Polaromonas sp. | RbsD or FucU transport [Polaromonas sp. JS666] MLKNIPPLLTPDALHALASMGHGDDVAIVDANFPAARVAQQSGARLVQLAGTSAPQVLNAVLQLLPLDDF VPDAAWTMQVVGNATAIPAPVAEFASALAQAGERPAVSLERFDFYERAQSAYLILQTGEQRKYGNIVLRK GVIASDDE Danio rerio | hypothetical protein LOC447896 [Danio rerio] MVILKGIPSVLTPELLYVLAQMGHGDELVLADANFPTSSVCKCGPVEIRADGVRIPELLKAILKLFPLDT YDESAAVMDLVPSDLLKGLKVPIWDQYSELLKQAGSDGNMKPVERFAFYERAKKAFAVVATGETALYGNL IIKKGVIPPEEQC Bos taurus | hypothetical protein LOC613571 [Bos taurus] MVVLKGVPALLSPELLFALARMGHGDEIVLADVNFPSSSICRGGPEEIRADGLGIPQLLEAVLQLLPLDT YVQSPAMVMELVPSDRKSGLLTPVWTSYQSILSRAGYEFSLGMGRFAFYERAKKAFAVVATGETALYGNL ILKKGVLAPKDLC Hydra magnipapillata | PREDICTED: similar to Protein fucU homolog [Hydra magnipapillata] MVMLKGIPSILSPELLLVLAKMGHGDEIVLADANFPSASVCKTNGAELIRADGLGCTDLLKAVLELLPLD TYVDAPVFLMERTPSDKNIDLKTPIWDEFKNVVNNAEQRHVCIKFVERFDFYEQAKRACAVVATGEKALY GNIILKKGVIKTSN Haemophilus somnus | RbsD or FucU transport [Haemophilus somnus 2336] MLKGIHPAISPDLLKILAEMGHGDELVLSDAHFPAHQLHHKVVRADGISINSLLTGITPLFEFDTYTEAP LIMMQAVEGDSLDPAVEQSYLQTIKSAVGNVPKLARMDRFAFYERAKQAYAVVITGETAKYGNIIIKKGV TPVK Leptothrix cholodnii | RbsD or FucU transport [Leptothrix cholodnii SP-6] MLKGIDPLLTPDLLKVLAEMGHGDEIVIADANFTAASLAIGANGVRKPVLHVSGAGIGRTVEAVIKLLPL DAAVEQPVAYMQVSDTPAGYRSRLQRDVIAMLADGGHARPEQCQAIERFAFYDRVSGAFAIVLTGDLQPY GNFILKKGVIGEALDP Branchiostoma floridae | hypothetical protein BRAFLDRAFT_114245 [Branchiostoma floridae] MVVLKGIPRILSPELLFVLARMGHGDEIVFADANFPTSSICSSGPIEVRADGHCIPALLKAVLELLPLDT YVESPAAVMDLVPGDKEKGLKTPVWDTYRGLLKEAGSTAPLEQVERFDFYERAKKAFAVVATGETALYGN IILKKGVIAPD Homo sapiens | hypothetical protein LOC282969 isoform 1 [Homo sapiens] MVALKGVPALLSPELLYALARMGHGDEIVLADLNFPASSICQCGPMEIRADGLGIPQLLEAVLKLLPLDT YVESPAAVMELVPSDKERGLQTPVWTEYESILRRAGCVRALAKIERFEFYERAKKAFAVVATGETALYGN LILRKGVLALNPLL E.coli fucose|B7UHM0|B7UHM0_ECO27 L-fucose mutarotase; MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPL FELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDIIRINRFAFYERAQKAFAI VITGERAKYGNILLKKGVTP Streptococcus pneumoniae|A5LR08|A5LR08_STRPN RbsD/FucU transport protein family protein; MLKHIPKNISPDLLKTLMEMGHGDEIVLADANYPSASCANKLIRCDGVNIPELLDSILYL MPLDSYVDSSIQFMNVVSGDDIPKIWGTYRQMIEGHGTDLKTITYLRREDFYERSKKAYA IVATGETSLYANIILKKGVVVERENV Roseburia inulinivorans|Q1A686|Q1A686_9FIRM Fucose transport protein; MLKGIPKILSPELLKVLAEMGHSDRLVISDGNFPAESMGKDAIVIRCDGHGVPEILDAIL QVFPLDTYVEKPVNLMEVMPGDNVETPIWDTYKEIIAKYDDRGADAVGNIERFAFYDEAK KVYAIIATGETALYANIMLQKGVVVD Mus musculus|Q8R2K1|CJ125_MOUSE Protein fucU homolog; MVALKGIPKVLSPELLFALARMGHGDEIVLADANFPTSSICQCGPVEIRADGLDIPQLLE AVLRLLPLDTYVESPAAVMDLVPSDKEKGLQTPIWKRYESLLLEADCKKTLMKLERFEFY ERAKKAFAVVATGEMALYGNIILKKGTLDLGPS Rattus norvegicus | hypothetical protein LOC293587 [Rattus norvegicus] MVVLKGIPTVLSPELLFALARMGHGDEIVLADANFPTSSICQCGPIEIRADGLDIPQLLEAVLKLLPLDT YVESPAAVMDLVPSDKEKGLQTPIWDHYEYLLLKADCKKALRKIERFEFYERAKKAFAVVATGEMALYGN IILKKGTLDLGPS Sus scrofa | PREDICTED: similar to Protein fucU homolog [Sus scrofa] MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCRCGPEEIRADGLGIPQLLEAVLTLLPLDT YVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTSSLTAIERFEFYERAKKAFAVVATGETALYGN LILKKGVLAPGALSQAC >Mesorhizobium loti|ref|NP_108576.1| hypothetical protein mlr8491 [Mesorhizobium loti MAFF303099] MLKGINPLLNADVLQALRAMGHGDDLIIADTNFPSDSVARQTALGRLLRIDASAAEVVKAVLSLYPLDTF VDDAAARMEIVGKPDEIPSVQKEVQKEIDAAEGKSWPMLPVERYAFYERAKQAYCVIQTGERRFYGCFAF RKGVIPPDAE >Bifidobacterium longum|ref|YP_002323773.1| RbsD or FucU transport [Bifidobacterium longum subsp. infantis ATCC 15697] MLKGIPPIIQPDLLKILSEMGHGDAIVLADAHFPAESVGVRSHVIRYDGQPIEPLLDAVLQLIPLDQYTE HPVLLMDKVPGDTVDTPIWDRYRQVIDRHEPGKQAGIGMLERFAFYEEAGRSYCIVATGEQSQYANIIIR KGVIR >Salmonella typhimurium|ref|NP_462780.1| D-ribose pyranase [Salmonella typhimurium LT2] MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILA TEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVTF VTF >Bacillus subtilis| D-ribose pyranase [Bacillus subtilis subsp. subtilis str. 168] MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAA AEIKASNQENAKFLENLFSEQEIEYLSHEEFKLLTKDAKAVIRTGEFTPYANCILQAGVLF >Vibrio harveyi|YP_001448266.1| D-ribose pyranase [Vibrio harveyi ATCC BAA-1116] MKKSTLINSEVSRLIATLGHTDEITICDAGLPIPDHVQRIDLALAHGIPGFLDTVRVILSESQIEGVIIA EEFATVSPVHHDALITELAQESGLTGKPIAINYVSHEDFKVRTSQSRAVVRTGECTPYANVILQAGVVF >Lactobacillus johnsonii|ref|NP_965069.1| D-ribose pyranase [Lactobacillus johnsonii NCC 533] MKKTGVMNSNISRVIADMGHMDWLGVGDAGTPVPAETEKIDLSVRPGLPSFIDVLEEVLKELEVQKMYIA EEIKTENPKQLEAIKRTVPNVEIEFIPHSELKKDLKSSKAFIRTGEETPYSNVILESGVVF >Photobacterium sp| ribose ABC transporter protein [Photobacterium sp. SKA34] MKKSTLINSELSYLVATLGHTDEITICDAGLPIPDHVQRIDLALTHGVPSFLDTVRAMLSETCIEGVIMA EEFAQVSPEHHQALLVELELEQAKIDKKIHIQYVTHEQFKQRTEQSRAIVRTGECTPYANVIFQSGVVF >Ee.coli Ribose|AE016769_223 High affinity ribose transport protein rbsD [Escherichia coli CFT073] MEKKMKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEA VIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVIRSGECSPYANIILCAG VTF

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