|
|
| Line 6: |
Line 6: |
| Sequences gathered for MSA (including query): | | Sequences gathered for MSA (including query): |
|
| |
|
| '''Agrobacterium tumefaciens | hypothetical protein Atu2016 [Agrobacterium tumefaciens str. C58]
| |
| MLKNIDPALNADVLHALRAMGHGDTLVISDTNFPSDSVARQTTVGKVLHIDNVSAARAMKAILSVLPLDT
| |
| PLQPSVGRMEVMGAPDQLEPVQVEVQQEIDAAEGKSAPMYGIERFAFYEKAKQAYCVITTGETRFYGCFL
| |
| LTKGVIPPK
| |
| Sinorhizobium medicae | RbsD or FucU transport [Sinorhizobium medicae WSM419]
| |
| MLKNIDPALNADVLHALRSMGHGDTLVISDTNFPSDAIARQTTLGKLLHIDNVSAARAAKAILSVLPLDT
| |
| PLQPSAGRMEVMGAPDEVPGVQREVQAEIDRAEGKPAPMYGIERFAFYEEAKKAYCVITTGETRFYGCFL
| |
| FTKGVVPPETI
| |
| Rhizobium leguminosarum | putative fucose binding protein [Rhizobium leguminosarum bv. viciae 3841]
| |
| MLKNIDPALNADVLHALRSMGHGDTVVVSDTNFPSDSIARQTVLGKLLRIDNVSAARAIEAILSVMPLDT
| |
| PLQPSAGRMEIMGAPDEIPPVQQEVQAVIDGAEGKPAPMYGIERFAFYEEAKKAYCVITTGENRFYGCFL
| |
| FTKGVIPPEAV
| |
| Oceanicola granulosus | FucU, fucose operon fucU protein [Oceanicola granulosus HTCC2516]
| |
| MLRNIPPILSPDLLHALAAMGHGDDIVIADANFPGTSMGRRLLRLDGISATDTLEAVLGLLPLDSFVPDP
| |
| ALVMEVVDDPDAVPEIVADFQTIIDATADHPAKVARLERFAFYERAKEAFAVIQTGETRLYGNIILKKGV
| |
| IG
| |
| Sagittula stellata E-37| fucose dissimilation pathway protein [Sagittula stellata E-37]
| |
| MLRNIPAILSPDILHTLRAMGHGDILAITDANFPAYSMGCKVHRLDGIPATDVLDAVLTLMPLDSFIPDP
| |
| AYTMQVVDDPNAVPEIVARFQDIIDRVSDNPTKIITAERFAFYDRAKSSFAVIQTGETRLYGNILLTKGI
| |
| IPPG
| |
| Tolumonas auensis | RbsD or FucU transport [Tolumonas auensis DSM 9187]
| |
| MLKNIPPFMDAELLWILAAMGHGDELAVVDRNFPARSIANETTSGKLVSLGGMDAPTCISGILELMPLDN
| |
| FVPTPVGWMDPVDQPGTILSVHHDVLAACKKAENAEVGHYVIERFDYYAAAKKCFAVVQTSENRPYGCFI
| |
| LKKGVVFD
| |
| Brucella melitensis | fucose operon FUCU protein [Brucella melitensis 16M]
| |
| MLKNINPLLTGSLLAILADMGHGDDLVIVDANYPAQAAGVPVLDFPGISATQVAEAVLSLLPLDDFVDRP
| |
| AAVMQAPNEMPAIFKEFEAVIEKAEGRKIPVEPIERFAFYDRARGAFAIIRTGEKRLYGNIIFKKGVIRS
| |
| Polaromonas sp. | RbsD or FucU transport [Polaromonas sp. JS666]
| |
| MLKNIPPLLTPDALHALASMGHGDDVAIVDANFPAARVAQQSGARLVQLAGTSAPQVLNAVLQLLPLDDF
| |
| VPDAAWTMQVVGNATAIPAPVAEFASALAQAGERPAVSLERFDFYERAQSAYLILQTGEQRKYGNIVLRK
| |
| GVIASDDE
| |
| Danio rerio | hypothetical protein LOC447896 [Danio rerio]
| |
| MVILKGIPSVLTPELLYVLAQMGHGDELVLADANFPTSSVCKCGPVEIRADGVRIPELLKAILKLFPLDT
| |
| YDESAAVMDLVPSDLLKGLKVPIWDQYSELLKQAGSDGNMKPVERFAFYERAKKAFAVVATGETALYGNL
| |
| IIKKGVIPPEEQC
| |
| Bos taurus | hypothetical protein LOC613571 [Bos taurus]
| |
| MVVLKGVPALLSPELLFALARMGHGDEIVLADVNFPSSSICRGGPEEIRADGLGIPQLLEAVLQLLPLDT
| |
| YVQSPAMVMELVPSDRKSGLLTPVWTSYQSILSRAGYEFSLGMGRFAFYERAKKAFAVVATGETALYGNL
| |
| ILKKGVLAPKDLC
| |
| Hydra magnipapillata | PREDICTED: similar to Protein fucU homolog [Hydra magnipapillata]
| |
| MVMLKGIPSILSPELLLVLAKMGHGDEIVLADANFPSASVCKTNGAELIRADGLGCTDLLKAVLELLPLD
| |
| TYVDAPVFLMERTPSDKNIDLKTPIWDEFKNVVNNAEQRHVCIKFVERFDFYEQAKRACAVVATGEKALY
| |
| GNIILKKGVIKTSN
| |
| Haemophilus somnus | RbsD or FucU transport [Haemophilus somnus 2336]
| |
| MLKGIHPAISPDLLKILAEMGHGDELVLSDAHFPAHQLHHKVVRADGISINSLLTGITPLFEFDTYTEAP
| |
| LIMMQAVEGDSLDPAVEQSYLQTIKSAVGNVPKLARMDRFAFYERAKQAYAVVITGETAKYGNIIIKKGV
| |
| TPVK
| |
| Leptothrix cholodnii | RbsD or FucU transport [Leptothrix cholodnii SP-6]
| |
| MLKGIDPLLTPDLLKVLAEMGHGDEIVIADANFTAASLAIGANGVRKPVLHVSGAGIGRTVEAVIKLLPL
| |
| DAAVEQPVAYMQVSDTPAGYRSRLQRDVIAMLADGGHARPEQCQAIERFAFYDRVSGAFAIVLTGDLQPY
| |
| GNFILKKGVIGEALDP
| |
| Branchiostoma floridae | hypothetical protein BRAFLDRAFT_114245 [Branchiostoma floridae]
| |
| MVVLKGIPRILSPELLFVLARMGHGDEIVFADANFPTSSICSSGPIEVRADGHCIPALLKAVLELLPLDT
| |
| YVESPAAVMDLVPGDKEKGLKTPVWDTYRGLLKEAGSTAPLEQVERFDFYERAKKAFAVVATGETALYGN
| |
| IILKKGVIAPD
| |
| Homo sapiens | hypothetical protein LOC282969 isoform 1 [Homo sapiens]
| |
| MVALKGVPALLSPELLYALARMGHGDEIVLADLNFPASSICQCGPMEIRADGLGIPQLLEAVLKLLPLDT
| |
| YVESPAAVMELVPSDKERGLQTPVWTEYESILRRAGCVRALAKIERFEFYERAKKAFAVVATGETALYGN
| |
| LILRKGVLALNPLL
| |
| E.coli fucose|B7UHM0|B7UHM0_ECO27 L-fucose mutarotase;
| |
| MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIRADGLLVSDLLQAIIPL
| |
| FELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDIIRINRFAFYERAQKAFAI
| |
| VITGERAKYGNILLKKGVTP
| |
| Streptococcus pneumoniae|A5LR08|A5LR08_STRPN RbsD/FucU transport protein family protein;
| |
| MLKHIPKNISPDLLKTLMEMGHGDEIVLADANYPSASCANKLIRCDGVNIPELLDSILYL
| |
| MPLDSYVDSSIQFMNVVSGDDIPKIWGTYRQMIEGHGTDLKTITYLRREDFYERSKKAYA
| |
| IVATGETSLYANIILKKGVVVERENV
| |
| Roseburia inulinivorans|Q1A686|Q1A686_9FIRM Fucose transport protein;
| |
| MLKGIPKILSPELLKVLAEMGHSDRLVISDGNFPAESMGKDAIVIRCDGHGVPEILDAIL
| |
| QVFPLDTYVEKPVNLMEVMPGDNVETPIWDTYKEIIAKYDDRGADAVGNIERFAFYDEAK
| |
| KVYAIIATGETALYANIMLQKGVVVD
| |
| Mus musculus|Q8R2K1|CJ125_MOUSE Protein fucU homolog;
| |
| MVALKGIPKVLSPELLFALARMGHGDEIVLADANFPTSSICQCGPVEIRADGLDIPQLLE
| |
| AVLRLLPLDTYVESPAAVMDLVPSDKEKGLQTPIWKRYESLLLEADCKKTLMKLERFEFY
| |
| ERAKKAFAVVATGEMALYGNIILKKGTLDLGPS
| |
| Rattus norvegicus | hypothetical protein LOC293587 [Rattus norvegicus]
| |
| MVVLKGIPTVLSPELLFALARMGHGDEIVLADANFPTSSICQCGPIEIRADGLDIPQLLEAVLKLLPLDT
| |
| YVESPAAVMDLVPSDKEKGLQTPIWDHYEYLLLKADCKKALRKIERFEFYERAKKAFAVVATGEMALYGN
| |
| IILKKGTLDLGPS
| |
| Sus scrofa | PREDICTED: similar to Protein fucU homolog [Sus scrofa]
| |
| MVALKGIPALLSPELLYALARMGHGDEIVLADVNFPTSSVCRCGPEEIRADGLGIPQLLEAVLTLLPLDT
| |
| YVESPAAVMELVPSDRERGLQTPVWTSYQSILLQAGCTSSLTAIERFEFYERAKKAFAVVATGETALYGN
| |
| LILKKGVLAPGALSQAC
| |
| >Mesorhizobium loti|ref|NP_108576.1| hypothetical protein mlr8491 [Mesorhizobium loti MAFF303099]
| |
| MLKGINPLLNADVLQALRAMGHGDDLIIADTNFPSDSVARQTALGRLLRIDASAAEVVKAVLSLYPLDTF
| |
| VDDAAARMEIVGKPDEIPSVQKEVQKEIDAAEGKSWPMLPVERYAFYERAKQAYCVIQTGERRFYGCFAF
| |
| RKGVIPPDAE
| |
| >Bifidobacterium longum|ref|YP_002323773.1| RbsD or FucU transport [Bifidobacterium longum subsp. infantis ATCC 15697]
| |
| MLKGIPPIIQPDLLKILSEMGHGDAIVLADAHFPAESVGVRSHVIRYDGQPIEPLLDAVLQLIPLDQYTE
| |
| HPVLLMDKVPGDTVDTPIWDRYRQVIDRHEPGKQAGIGMLERFAFYEEAGRSYCIVATGEQSQYANIIIR
| |
| KGVIR
| |
| >Salmonella typhimurium|ref|NP_462780.1| D-ribose pyranase [Salmonella typhimurium LT2]
| |
| MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMALTQGVPSFMQVVDVVTREMQVEAAILA
| |
| TEIKQQNPQLHETLLTHLEQLQQHQGNTIKISYTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVTF
| |
| VTF
| |
| >Bacillus subtilis| D-ribose pyranase [Bacillus subtilis subsp. subtilis str. 168]
| |
| MKKHGILNSHLAKILADLGHTDKIVIADAGLPVPDGVLKIDLSLKPGLPAFQDTAAVLAEEMAVEKVIAA
| |
| AEIKASNQENAKFLENLFSEQEIEYLSHEEFKLLTKDAKAVIRTGEFTPYANCILQAGVLF
| |
| >Vibrio harveyi|YP_001448266.1| D-ribose pyranase [Vibrio harveyi ATCC BAA-1116]
| |
| MKKSTLINSEVSRLIATLGHTDEITICDAGLPIPDHVQRIDLALAHGIPGFLDTVRVILSESQIEGVIIA
| |
| EEFATVSPVHHDALITELAQESGLTGKPIAINYVSHEDFKVRTSQSRAVVRTGECTPYANVILQAGVVF
| |
| >Lactobacillus johnsonii|ref|NP_965069.1| D-ribose pyranase [Lactobacillus johnsonii NCC 533]
| |
| MKKTGVMNSNISRVIADMGHMDWLGVGDAGTPVPAETEKIDLSVRPGLPSFIDVLEEVLKELEVQKMYIA
| |
| EEIKTENPKQLEAIKRTVPNVEIEFIPHSELKKDLKSSKAFIRTGEETPYSNVILESGVVF
| |
| >Photobacterium sp| ribose ABC transporter protein [Photobacterium sp. SKA34]
| |
| MKKSTLINSELSYLVATLGHTDEITICDAGLPIPDHVQRIDLALTHGVPSFLDTVRAMLSETCIEGVIMA
| |
| EEFAQVSPEHHQALLVELELEQAKIDKKIHIQYVTHEQFKQRTEQSRAIVRTGECTPYANVIFQSGVVF
| |
| >Ee.coli Ribose|AE016769_223 High affinity ribose transport protein rbsD [Escherichia coli CFT073]
| |
| MEKKMKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMALTQGVPSFMQVLGVVTNEMQVEA
| |
| VIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIRYTTHEQFKQQTAESQAVIRSGECSPYANIILCAG
| |
| VTF'''
| |
|
| |
|
|
| |
|
