Journal Club: Difference between revisions
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# Ulrich H.E. Hansmann, Yuko Okamoto, Frank Eisenmenger, [[Media:Hansmann96.pdf| Molecular dynamics, Langevin and hybrid Monte Carlo simulations in a multicanonical ensemble]], Chem Phys Lett 259 (1996) 321-330. | # Ulrich H.E. Hansmann, Yuko Okamoto, Frank Eisenmenger, [[Media:Hansmann96.pdf| Molecular dynamics, Langevin and hybrid Monte Carlo simulations in a multicanonical ensemble]], Chem Phys Lett 259 (1996) 321-330. | ||
# Ayori Mitsutake and Yuko Okamoto, [[Media:Okamoto09.pdf| From multidimensional replica-exchange method to multidimensional multicanonical algorithm and simulated tempering]], Phys Rev E 79 (2009) 047701. | # Ayori Mitsutake and Yuko Okamoto, [[Media:Okamoto09.pdf| From multidimensional replica-exchange method to multidimensional multicanonical algorithm and simulated tempering]], Phys Rev E 79 (2009) 047701. | ||
=== Past Journal Clubs === | |||
=== June 09 === | === June 09 === | ||
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#Joosten et al. (2009)[[Media:Joosten_ActaCrystallogrD2009.pdf| Re-refinement from deposited X-ray data can deliver improved models for most PDB entries.]] ''Acta Crystallogr.'' '''D65''', 176-185 | #Joosten et al. (2009)[[Media:Joosten_ActaCrystallogrD2009.pdf| Re-refinement from deposited X-ray data can deliver improved models for most PDB entries.]] ''Acta Crystallogr.'' '''D65''', 176-185 | ||
#Joosten et al. (2009)[[Media:Joosten_JApplCrystal2009.pdf| PDB_REDO: automated re-refinement of X-ray structure models in the PDB.]] ''J. Appl. Cryst.'' '''42''', 376-384 | #Joosten et al. (2009)[[Media:Joosten_JApplCrystal2009.pdf| PDB_REDO: automated re-refinement of X-ray structure models in the PDB.]] ''J. Appl. Cryst.'' '''42''', 376-384 | ||
==== May 09 ==== | ==== May 09 ==== | ||
Revision as of 05:55, 21 July 2009
Schedule
See the Group meeting schedule.
Megan is in charge of the organization of the Journal Club. In no way she is the one to find all the papers for every Journal Club!
Journal Club Papers
Paper(s) for the next Journal Club
July 09
- U.H.E. Hansmann and Y. Okanoto, Prediction of Peptide Conformation by Multicanonical Algorithm: A New Approach to the Multiple-Minima Problem, Journal of Computational Chemistry, 14 (1993) 1333.
- Ulrich H.E. Hansmann, Yuko Okamoto, Frank Eisenmenger, Molecular dynamics, Langevin and hybrid Monte Carlo simulations in a multicanonical ensemble, Chem Phys Lett 259 (1996) 321-330.
- Ayori Mitsutake and Yuko Okamoto, From multidimensional replica-exchange method to multidimensional multicanonical algorithm and simulated tempering, Phys Rev E 79 (2009) 047701.
Past Journal Clubs
June 09
- Joosten and Vriend (2007) PDB Improvement Starts with Data Deposition. Science 317, 195-196
- Joosten et al. (2009) Re-refinement from deposited X-ray data can deliver improved models for most PDB entries. Acta Crystallogr. D65, 176-185
- Joosten et al. (2009) PDB_REDO: automated re-refinement of X-ray structure models in the PDB. J. Appl. Cryst. 42, 376-384
May 09
- Omabegho et al. (2009) A bipedal DNA Brownian motor with coordinated legs. Science 324, 67-71
March 09
- Chang et al. (2001) Structure of MsbA from E. coli: A Homolog of the Multidrug Resistance ATP Binding Cassette (ABC) Transporters. Science 293, 1793-1800
- Miller (2006) A Scientist’s Nightmare: Software Problem Leads to Five Retractions. Science 314, 1856-1857
- Petsko (2007) And the second shall be first. Genome Biol. 8,103
- Jeffrey (2009) Analysis of errors in the structure determination of MsbA. Acta Crystallogr. D65, 193–199
