Material and Method of SNAPG: Difference between revisions
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== '''Identifying Protein Function Analysis''' == | == '''Identifying Protein Function Analysis''' == | ||
The Fasta format file of N-ethylmaleide-sensitive factor attachment protein, gamma (SNAPG) was first obtained from BLAST. Several internet databases and software were used to obtain all important data and information of SNAPG including ProFunc, ProKnow, GO, STRING, LOCATE, PDB, Scorecons and Pymol. The PDB file code of SNAPG is 2ifuA which was derived from ''Danio | The Fasta format file of N-ethylmaleide-sensitive factor attachment protein, gamma (SNAPG) was first obtained from BLAST. Several internet databases and software were used to obtain all important data and information of SNAPG including ProFunc, ProKnow, GO, STRING, LOCATE, PDB, Scorecons and Pymol. The PDB file code of SNAPG is 2ifuA which was derived from ''Danio rerio''. All of the data and useful information were accumulated and compared each other to give the function prediction of SNAPG. Comparisons of structure similarity and conserved residue domain sequence alignments were obtained by submitting the Fasta format into ProFunc and ProKnow; which are the primary approaches for SNAPG analysis. Protein-protein interaction data from STRING, genomic context and cellular context were collected to give additional approaches on predicting function. Further information and deeper understanding of SNAPG function were put into this report from pubmed literatures. The final datas and results were then recorded and presented into mediawiki. | ||
Revision as of 23:18, 9 June 2007
Identifying Structural Protein
Identifying Protein Function Analysis
The Fasta format file of N-ethylmaleide-sensitive factor attachment protein, gamma (SNAPG) was first obtained from BLAST. Several internet databases and software were used to obtain all important data and information of SNAPG including ProFunc, ProKnow, GO, STRING, LOCATE, PDB, Scorecons and Pymol. The PDB file code of SNAPG is 2ifuA which was derived from Danio rerio. All of the data and useful information were accumulated and compared each other to give the function prediction of SNAPG. Comparisons of structure similarity and conserved residue domain sequence alignments were obtained by submitting the Fasta format into ProFunc and ProKnow; which are the primary approaches for SNAPG analysis. Protein-protein interaction data from STRING, genomic context and cellular context were collected to give additional approaches on predicting function. Further information and deeper understanding of SNAPG function were put into this report from pubmed literatures. The final datas and results were then recorded and presented into mediawiki.
Identifying Evolutionary Protein
Back to Scientific Report of N-ethylmaleide-sensitive factor attachment protein, gamma
