Meeting schedule: Difference between revisions

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== MD Group/BmM Group Meetings ==
== MD Group Meetings ==


This is the current MD Group/BmM Group meeting schedule. This is the '''most up-to-date version'''.
This is the current roster of the MD Group weekly meeting. This is the '''most up-to-date version'''.
*Please '''do not edit this''' without informing David
*Please '''do not edit this''' without informing Audrey
*Please '''add you talks''' for archive and reference reasons. This can be achieved by uploading the file (left hand toolbox) and linking to it.
*Please '''add you talks''' for archive and reference reasons. This can be achieved by uploading the file (left hand toolbox) and linking to it.
** If you get complaints about file size being to large - simply click upload anyway.
** If you get complaints about file size being to large - simply click upload anyway.
Line 10: Line 10:




* The meetings are held on Thursdays, every week at 11:15 am.
* The meetings are held on Thursdays, ''every week at <u>09:30 am</u>'', except third Thursday of a month when there is CTCMS seminar at 09:30 AM in the AIBN Seminar Room.
* The speakers are invited to present a '''research and/or a literature seminar or a conference report for example'''. This is left to their discretion (it's really up to you). Talks are 20 min long each (+ questions).
* Two speakers will be presenting on every meeting and talks should be 20 min each (questions included)
* For the Journal Club and the Theoretical Seminars, suggestions of articles can be made on the dedicated wiki pages:
* Everyone who is going to conference will be scheduled for a conference report (5&ndash;10 mins' talk) when back to the lab after the conference.
** [[Theoretical Seminars]]
* For the Journal Club, presentations are to be of a recent article from one of the assigned groups. Talks are 20 min long each (including questions).
** [[Journal Club]]
* The wiki pages [[Theoretical Seminars]] and [[Journal Club]] can bed used to find topics to be treated in seminars. Everyone is welcome to suggest and add new topics on these pages.
* The joint meeting with Bostjan Kobe's, Luke Guddat's and Mikael Bod&eacute;n's groups are every last Friday of the month in the seminar room 68-214 from 9 am to 11 am. There are 2 speakers per meeting. Talks should be 15&ndash;20 minutes long (+ discussion).




{| border="0" cellpadding="5" cellspacing="2"
|- style="background:#7fffd4"
| ''Inform Audrey if you swap with someone''
|}


<!--Joint group meeting: #fbc3c3; Theoretical Seminar: #cee7fb; SBF/COMBIO: #e4b1fc; IMB division: #f0e68c-->
=== Roster for 2020===


{| border="0" cellpadding="5" cellspacing="2"
{| border="0" cellpadding="5" cellspacing="2"
|- style="background:#c9c9c9"
|- style="background:#c9c9c9"
| style="width:100px"|Date
| style="width:100px"|Date
| style="width:250px"|Speakers
| style="width:350px"|Speakers
|-
| 30.01.20    || Chair: Martin  <br />  Speaker 1: Shelley <br /> Speaker 2: Tai <br /> Speaker 3: Joe
|-
| 06.02.20    || Chair: Nicole  <br />  Speaker 1: Audrey  <br /> Speaker 2: Callum
|-
| 13.02.20    || Canceled
|-
|-
| 12.03.09    || Mitchell
|- style="background:#7fffd4"
|- style="background:#c2fbd1"
| 20.02.20   || CTCMS
| 19.03.09   || ''Journal Club''
|-
|-
| 26.03.09   || Pramod
| 27.02.20   || Chair: Audrey <br /> Speaker 1: Shelley <br /> Speaker 2: Zihan
|- style="background:#f0abff"
| 02.04.09    || Anton ''(Honours Talk)''
|-
|-
| 09.04.09   || ''Cancelled''<br>9am: Liz's Confirmation Seminar (IMB, Large seminar room)<br>12pm: IMB "Friday" Seminar, [http://imb.uq.edu.au/index.html?page=11758 Prof. Dieter Seebach]
| 05.03.20   || Cancelled
|-
|-
| 16.04.09   || Flora & Matthew
| 12.03.20   || Cancelled
|- style="background:#cee7fb"
| 23.04.09    || ''Theoretical Seminar''<br>David: Determination of secondary structure elements (mainly DSSP and STRIDE)
|-
|-
| 30.04.09    || Ying & Alpesh
|- style="background:#7fffd4"
|- style="background:#c2fbd1"
| 19.03.20   || CTCMS -> Cancelled
| 07.05.09   || ''Journal Club''
|-
|-
| 14.05.09    || Mark & David
| 26.03.20  || Chair: Sharif <br />  Speaker 1: - <br /> Speaker 2: -
|- style="background:#cee7fb"
| 21.05.09    || ''Theoretical Seminar''<br>Alpesh:''Generating the force field for a heteromolecule''
|-
|-
| 28.05.09   || Roy & Michael
| 02.04.20   || Chair: Alan <br /> Speaker 1: Nicole <br /> Speaker 2: Martin
|- style="background:#f0abff"
| 04.06.09    || Flora ''(Final Talk)''
|-
|-
| 11.06.09   || ''Cancelled''
| 09.04.20   || Chair: Martin <br />  Speaker 1: Sharif <br /> Speaker 2:  
|- style="background:#c2fbd1"
| 18.06.09    || ''Journal Club''<br>Pramod:''TBA''
|-
|-
| 25.06.09   || Megan & Christophe
|- style="background:#7fffd4"
| 16.04.20   || CTCMS
|-
|-
| 02.07.09   || Nikhil
| 23.04.20   || Chair: Nicole <br />  Speaker 1: Zihan <br /> Speaker 2: Audrey 
|-
|-
| 09.07.09    || &mdash;
| 30.04.20  || Chair: Zihan <br /> Speaker 1: Shelley <br /> Speaker 2: Nicole
|-
|-
| 16.07.09    || David
| 07.05.20    || Chair: Audrey <br /> Speaker 1: Martin
|- style="background:#c2fbd1"
| 23.07.09    || ''Journal Club''<br>Thomas:''TBA''
|-
|-
| 30.07.09    || &mdash;
| 14.05.20    || Chair: Sharif <br />  Speaker 1: Stephen Sanderson
|-
|- style="background:#7fffd4"
| 21.05.20    || CTCMS
|-
| 28.05.20    || Chair: Shelley <br />  Speaker 1: Sarah Kurschert
|-
| 04.06.20    || Chair: Martin <br />  Speaker 1: Zihan
|-
| 11.06.20    || Chair: Audrey <br /> Speaker 1: Nicole 
|-
|- style="background:#7fffd4"
| 18.06.20    || CTCMS
|-
| 25.06.20    || Chair: Nicole <br />  Speaker 1: -
|-
| 02.07.20    || Chair: Sharif <br /> Speaker 1: Audrey
|-  
|-  
| 06.08.09    || ''Cancelled''
| 09.07.20    || Chair: Zihan <br />  Speaker 1 : Sharif 
|-
|- style="background:#7fffd4"
| 16.07.20    || CTCMS
|-
| 23.07.20      || Chair: Martin <br />  Speaker 1 : Shelley 
|-
| 30.07.20    || Chair: Shelley <br /> Speaker 1: Martin
|-
| 6.08.20      || Chair: Audrey <br /> Speaker 1: Abhay Sharma
|-
| 13.08.20      || Chair: Nicole <br />  Speaker 1: Zihan     
|-
|- style="background:#7fffd4"
| 20.08.20    ||  CTCMS
|-
| 27.08.20    || Chair: Sharif <br /> Speaker 1: Audrey
|-
| 03.09.20    || Chair: Zihan <br />  Speaker 1: Nicole
|-
| 10.09.20    ||  Chair: Martin <br /> Speaker 1: Sharif
|-
|- style="background:#7fffd4"
| 17.09.20    || CTCMS
|-
| 24.09.20    || Chair: Nicole <br /> Speaker 1: Shelley
|-
| 01.10.20   || Chair: Shelley <br /> Speaker 1: Martin
|-
|-
| 13.08.09    || Rong & Pramod
| 08.10.20    ||   Chair: Audrey <br /> Speaker 1: Zihan
|-
|-
| 20.08.09    || Rong ''(Confirmation seminar)''
|- style="background:#7fffd4"
|- style="background:#c2fbd1"
| 15.10.20    || CTCMS
| 27.08.09    || ''Journal Club''<br>Seth
|- style="background:#cee7fb"
| 03.09.09    || ''Theoretical Seminar''<br>Ying: ''Water models in computer simulation''
|-
|-
| 10.09.09    || Rong
| 22.10.20    || Chair:  <br />  Speaker 1: <br /> Speaker 2:
|- style="background:#c2fbd1"
| 17.09.09    || ''Journal Club''<br>Anton
|-
|-
| 24.09.09   || Moritz
| 29.10.20   || Chair:  <br />  Speaker 1:  <br /> Speaker 2:
|- style="background:#f0abff"
| 01.10.09    || ''Cancelled''
|-
|-
| 08.10.09    || ''Introduce Yourself!''<br>Everyone
| 05.11.20  || Chair: <br /> Speaker 1:     <br /> Speaker 2:  
|- style="background:#c2fbd1"
| 15.10.09    || ''Journal Club''<br>Rong
|- style="background:#cee7fb"
| 22.10.09    || ''Theoretical Seminar''<br>Matt: ''GPU computational methods''
|-
|-
| 29.10.09    || Mitchell & Alpesh
| 12.11.20    ||   Chair: <br /> Speaker 1:  <br /> Speaker 2:
|-
|-
| 05.11.09    || Anton & Megan
| 19.11.20    || Chair: <br />  Speaker 1:     <br />Speaker 2:
|- style="background:#c2fbd1"
| 12.11.09    || ''Journal Club''<br>Pramod: ''TBA''
|-
|-
| 19.11.09    || [http://hs3.otago.ac.nz/hs_staff/pharmacy/FMPro?-db=staff_profiles.fp5&-format=profile.html&-lay=data&name_first=joel&name_last=tyndall&-find= Joel Tyndall]<br>''University of Otago, NZ''
|- style="background:#7fffd4"
| 13 to 15 November 19     || Theme Retreat
|-
|-
| 26.11.09   || Moritz & David
| 26.11.20   || Chair:  <br /> Speaker 1: <br />Speaker 2:  
|- style="background:#cee7fb"
| 03.12.09    || ''Theoretical Seminar''<br>Roy: ''TBA''
|-
|-
| 10.12.09    || Seth & Rong
|- style="background:#ffff00;color:#ff8400"
| colspan="2" align="center"| '''Summer Break'''
|}


== Journals to be assigned for the Journal Clubs ==


''<u>Suggested topics for future theoretical seminars:</u>''<br>Force field parameterization, potential energy surfaces, mixed QM/MM.
{| border="0" cellpadding="5" cellspacing="10"
|-
|style="width:200px"|'''Alpesh'''<br>J. Comput.-Aided Mol. Des. <br>Phys. Rev. Lett. <br>J. Mol. Biol. <br>Proteins       
|style="width:200px"|'''David''' <br>Angew. Chem. Int. Ed. <br>Biochim. Biophys. Acta Biomembr. <br>Mol. Cell         
|style="width:200px"|'''Evelyne'''<br>Chem. Commun.  <br>Phys. Chem. Chem. Phys. <br>Nat. Struc. Mol. Biol.  <br>Science     
|style="width:200px"|'''Karmen'''<br>Nat. Chem. Biol.<br>Biophys. Chem. <br>Nature <br>Curr. Opin. Struct. Biol.
|style="width:200px"|'''Nanditha'''<br>J. Chem. Theory Comput.  <br>J. Phys. Chem. B <br>Biochemistry  <br>Proteins         
|style="width:200px"|'''Lachlan'''<br>J. Biol. Chem.<br>Eur. Biophys. J.<br>FEBS Lett.<br>EMBO J.
|-
|style="width:200px"|'''Bertrand''' <br>FEBS J <br>Chem. Rev. <br> Soft Matter
|style="width:200px"|'''Kasia''' <br>J. Comput. Chem. <br>Med. Chem. Commun. <br>Langmuir             
|style="width:200px"|'''Martin'''<br>J. Chem. Phys. <br>J. Phys. Chem. Lett. <br>Faraday Discuss.
|style="width:200px"|'''Michael'''<br>PLoS Comput. Biol.<br>J. Am. Chem. Soc.<br>EMBO Rep
|style="width:200px"|'''Alex'''<br>Proc. Natl. Acad. Sci. USA<br>Biophys. J.
|style="width:200px"|'''Glen'''<br>Bioinformatics <br>Structure
|}


== Other important dates ==
== Other important dates ==
{| border="0" cellpadding="5" cellspacing="2"
|- style="background:#c9c9c9"
| style="width:100px"|Date
| style="width:250px"|Speaker
|- style="background:#fbc3c3"
| 25.02.09    || Megan ''(Joint group meeting)''
|- style="background:#fbf8a8"
| 18.03.08    || Megan ''(Structural Biology Forum)''
|- style="background:#fbc3c3"
| 27.05.09    || Alpesh ''(Joint group meeting)''
|- style="background:#fbf8a8"
| 10.06.09    || David ''(Structural Biology Forum)''
|- style="background:#b2ed52"
| 06.07.09    || Megan ''(Monday Midday Meeting)''
|- style="background:#fbf8a8"
| 08.07.08    || Mitchell ''(Structural Biology Forum)''
|- style="background:#fbc3c3"
| 29.07.09    || Roy ''(Joint group meeting)''
|- style="background:#fbf8a8"
| 05.08.09    || Alpesh ''(Structural Biology Forum)''
|- style="background:#b2ed52"
| 07.09.09    || David ''(Monday Midday Meeting)''
|- style="background:#fbc3c3"
| 30.09.09    || David ''(Joint group meeting)''
|- style="background:#fbf8a8"
| 14.10.09    || Pramod ''(Structural Biology Forum)''<br>Confirmation Seminar
|- style="background:#fbc3c3"
| 18.11.09    || Pramod ''(Joint group meeting)''
|}
The Structural Biology Forum is held every two weeks on Wednesdays at 4pm at the IMB (large seminar room).
The Monday Midday Meeting (MMM) is every Monday, 12-1pm.
The joint meeting with Bostjan Kobe's, Justin Hill's, Luke Guddat's and Horst Schirra's groups are every last Wednesday of the month on Level 5, Hawken Engineering building, Bldg 50 (Dorothy Hill Research Centre, above the engineering library) from 9 am to 11 am. There will be 2 speakers per meeting, with always one from Alan's group. Talks should be 15-20 minutes long (+ discussion).
* '''Chair of the joint meeting:'''
**Thomas: 27.05.09 and 18.11.09
**Alan: 25.02.09 and 26.08.09


== Items to Discuss at the Next Meeting ==
== Items to Discuss at the Next Meeting ==

Revision as of 00:16, 21 September 2020

MD Group Meetings

This is the current roster of the MD Group weekly meeting. This is the most up-to-date version.

  • Please do not edit this without informing Audrey
  • Please add you talks for archive and reference reasons. This can be achieved by uploading the file (left hand toolbox) and linking to it.
    • If you get complaints about file size being to large - simply click upload anyway.


If you would like someone from another lab to give a seminar, you are welcome to suggest a (some) name(s). In this case, it would be a longer seminar (40-45 min + questions).


  • The meetings are held on Thursdays, every week at 09:30 am, except third Thursday of a month when there is CTCMS seminar at 09:30 AM in the AIBN Seminar Room.
  • Two speakers will be presenting on every meeting and talks should be 20 min each (questions included)
  • Everyone who is going to conference will be scheduled for a conference report (5–10 mins' talk) when back to the lab after the conference.
  • For the Journal Club, presentations are to be of a recent article from one of the assigned groups. Talks are 20 min long each (including questions).
  • The wiki pages Theoretical Seminars and Journal Club can bed used to find topics to be treated in seminars. Everyone is welcome to suggest and add new topics on these pages.
  • The joint meeting with Bostjan Kobe's, Luke Guddat's and Mikael Bodén's groups are every last Friday of the month in the seminar room 68-214 from 9 am to 11 am. There are 2 speakers per meeting. Talks should be 15–20 minutes long (+ discussion).


Inform Audrey if you swap with someone


Roster for 2020

Journals to be assigned for the Journal Clubs

Date Speakers
30.01.20 Chair: Martin
Speaker 1: Shelley
Speaker 2: Tai
Speaker 3: Joe
06.02.20 Chair: Nicole
Speaker 1: Audrey
Speaker 2: Callum
13.02.20 Canceled
20.02.20 CTCMS
27.02.20 Chair: Audrey
Speaker 1: Shelley
Speaker 2: Zihan
05.03.20 Cancelled
12.03.20 Cancelled
19.03.20 CTCMS -> Cancelled
26.03.20 Chair: Sharif
Speaker 1: -
Speaker 2: -
02.04.20 Chair: Alan
Speaker 1: Nicole
Speaker 2: Martin
09.04.20 Chair: Martin
Speaker 1: Sharif
Speaker 2:
16.04.20 CTCMS
23.04.20 Chair: Nicole
Speaker 1: Zihan
Speaker 2: Audrey
30.04.20 Chair: Zihan
Speaker 1: Shelley
Speaker 2: Nicole
07.05.20 Chair: Audrey
Speaker 1: Martin
14.05.20 Chair: Sharif
Speaker 1: Stephen Sanderson
21.05.20 CTCMS
28.05.20 Chair: Shelley
Speaker 1: Sarah Kurschert
04.06.20 Chair: Martin
Speaker 1: Zihan
11.06.20 Chair: Audrey
Speaker 1: Nicole
18.06.20 CTCMS
25.06.20 Chair: Nicole
Speaker 1: -
02.07.20 Chair: Sharif
Speaker 1: Audrey
09.07.20 Chair: Zihan
Speaker 1 : Sharif
16.07.20 CTCMS
23.07.20 Chair: Martin
Speaker 1 : Shelley
30.07.20 Chair: Shelley
Speaker 1: Martin
6.08.20 Chair: Audrey
Speaker 1: Abhay Sharma
13.08.20 Chair: Nicole
Speaker 1: Zihan
20.08.20 CTCMS
27.08.20 Chair: Sharif
Speaker 1: Audrey
03.09.20 Chair: Zihan
Speaker 1: Nicole
10.09.20 Chair: Martin
Speaker 1: Sharif
17.09.20 CTCMS
24.09.20 Chair: Nicole
Speaker 1: Shelley
01.10.20 Chair: Shelley
Speaker 1: Martin
08.10.20 Chair: Audrey
Speaker 1: Zihan
15.10.20 CTCMS
22.10.20 Chair:
Speaker 1:
Speaker 2:
29.10.20 Chair:
Speaker 1:
Speaker 2:
05.11.20 Chair:
Speaker 1:
Speaker 2:
12.11.20 Chair:
Speaker 1:
Speaker 2:
19.11.20 Chair:
Speaker 1:
Speaker 2:
13 to 15 November 19 Theme Retreat
26.11.20 Chair:
Speaker 1:
Speaker 2:
Alpesh
J. Comput.-Aided Mol. Des.
Phys. Rev. Lett.
J. Mol. Biol.
Proteins
David
Angew. Chem. Int. Ed.
Biochim. Biophys. Acta Biomembr.
Mol. Cell
Evelyne
Chem. Commun.
Phys. Chem. Chem. Phys.
Nat. Struc. Mol. Biol.
Science
Karmen
Nat. Chem. Biol.
Biophys. Chem.
Nature
Curr. Opin. Struct. Biol.
Nanditha
J. Chem. Theory Comput.
J. Phys. Chem. B
Biochemistry
Proteins
Lachlan
J. Biol. Chem.
Eur. Biophys. J.
FEBS Lett.
EMBO J.
Bertrand
FEBS J
Chem. Rev.
Soft Matter
Kasia
J. Comput. Chem.
Med. Chem. Commun.
Langmuir
Martin
J. Chem. Phys.
J. Phys. Chem. Lett.
Faraday Discuss.
Michael
PLoS Comput. Biol.
J. Am. Chem. Soc.
EMBO Rep
Alex
Proc. Natl. Acad. Sci. USA
Biophys. J.
Glen
Bioinformatics
Structure

Other important dates

Items to Discuss at the Next Meeting