Meeting schedule: Difference between revisions

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This is the current roster of the MD Group weekly meeting. This is the '''most up-to-date version'''.
This is the current roster of the MD Group weekly meeting. This is the '''most up-to-date version'''.
*Please '''do not edit this''' without informing David
*Please '''do not edit this''' without informing Abhay
*Please '''add you talks''' for archive and reference reasons. This can be achieved by uploading the file (left hand toolbox) and linking to it.
*Please '''add you talks''' for archive and reference reasons. This can be achieved by uploading the file (left hand toolbox) and linking to it.
** If you get complaints about file size being to large - simply click upload anyway.
** If you get complaints about file size being to large - simply click upload anyway.
Line 10: Line 10:




* The meetings are held on Thursdays, ''every week at <u>10:30 am</u>''.
* The meetings are held on Thursdays, ''every week at <u>09:30 am</u>'', except third Thursday of a month when there is CTCMS seminar at 09:30 AM in the AIBN Seminar Room.
* The speakers are invited to present a '''research and/or a literature seminar'''. This is left to their discretion (it's really up to you). Talks are 20 min long each (+ questions).
* Two speakers will be presenting on every meeting and talks should be 20 min each (questions included)
* Everyone who is going to conference will be scheduled for a conference report (5&ndash;10 mins' talk) when one is back to the lab after the conference.
* Everyone who is going to conference will be scheduled for a conference report (5&ndash;10 mins' talk) when back to the lab after the conference.
* For the Journal Club, presentations are to be of a recent article from one of the assigned groups. Talks are 20 min long each (including questions).
* The wiki pages [[Theoretical Seminars]] and [[Journal Club]] can bed used to find topics to be treated in seminars. Everyone is welcome to suggest and add new topics on these pages.
* The wiki pages [[Theoretical Seminars]] and [[Journal Club]] can bed used to find topics to be treated in seminars. Everyone is welcome to suggest and add new topics on these pages.
* The joint meeting with Bostjan Kobe's, Luke Guddat's and Mikael Bod&eacute;n's groups are every last Wednesday of the month in the seminar room of the AIBN from 9 am to 11 am. There are 2 speakers per meeting. Talks should be 15&ndash;20 minutes long (+ discussion).
* The joint meeting with Bostjan Kobe's, Luke Guddat's and Mikael Bod&eacute;n's groups are every last Friday of the month in the seminar room 68-214 from 9 am to 11 am. There are 2 speakers per meeting. Talks should be 15&ndash;20 minutes long (+ discussion).
* For the Journal Clubs, each of us is assigned a group of 3 journals. The groups are defined below the roster.
 
 
{| border="0" cellpadding="5" cellspacing="2"
|- style="background:#7fffd4"
| ''Inform Abhay if you swap with someone''
|}


<!--Joint group meeting: #fbc3c3; Theoretical Seminar: #cee7fb; SBF/COMBIO: #e4b1fc; IMB division: #f0e68c-->
<!--Joint group meeting: #fbc3c3; Theoretical Seminar: #cee7fb; SBF/COMBIO: #e4b1fc; IMB division: #f0e68c-->


=== Provisional roster for the first 2012 semester===
=== Roster for 2022===


{| border="0" cellpadding="5" cellspacing="2"
{| cellspacing="2" cellpadding="5" border="0"
|- style="background:#c9c9c9"
|- style="background:#c9c9c9"
| style="width:100px"|Date
| style="width:100px"|Date
| style="width:250px"|Speakers
| style="width:350px"|Speakers
|-
| 09.02.12    || Guan Tat (GT)
|-
| 23.02.12    || Guang
|- style="background:#c2fbd1"
| 01.03.12    || ''Journal Club (Cancelled)''
|-
|-
| 08.03.12    || Pramod
| 09.02.23 || Chair: Sharif  <br />  Speaker: Tuan
|-
|-
| 15.03.12    || David
| 16.02.23 || -
|- style="background:#c2fbd1"
| 22.03.12    || ''Journal Club''
|-
|-
| 29.03.12    || Megan
| 23.02.23 || Chair: Audrey <br />  Speaker: Martin
|-
|-
| 05.04.12    || Nandhita
|- style="background:#7fffd4"
|- style="background:#c2fbd1"
| 24.02.23   || CTCMS
| 12.04.12   || ''Journal Club''
|-
|-
| 19.04.12   || Lachlan
| 02.03.23   || Chair: Evelyne<br />  Speaker: Aude
|-
| 26.04.12    || Alpesh
|- style="background:#c2fbd1"
| 03.05.12    || ''Journal Club''
|-
|-
| 10.05.12   || Guang
| 09.03.23   || Chair: Alan<br />  Speaker: Tuan
|-
|-
| 17.05.12   || Pramod
| 16.03.23   || -
|- style="background:#c2fbd1"
| 24.05.12    || ''Journal Club''
|-
|-
| 31.05.12   || ''Cancelled''
|- style="background:#7fffd4"
| 17.03.23   || CTCMS
|-
|-
| 07.06.12   || Megan
| 23.03.23   || Chair: Martin <br />  Speaker: Ada
|- style="background:#c2fbd1"
| 14.06.12    || ''Journal Club (1/2)''
|- style="background:#c2fbd1"
| 21.06.12    || ''Journal Club (2/2)''
|-
|-
| 28.06.12   || David
| 30.03.23   || Chair: Audrey <br />  Speaker: Alan
|-
|-
| 05.07.12   || Nandhita
| 06.04.23   || Chair: Ada <br />  Speaker: Yumeng
|- style="background:#c2fbd1"
| 12.07.12    || ''Journal Club''
|-
|-
| 19.07.12   || Martin
| 13.04.23   || Chair: Zihan <br />  Speaker: Rangika
|-
| 20.04.23    || Chair: Alan <br />  Speaker: -
|- style="background:#7fffd4"
| 21.04.23    || CTCMS
|-
|-
| 26.07.12   || Evelyne
| 27.04.23   || Chair: Evelyne <br />  Speaker: Sharif
|- style="background:#c2fbd1"
| 02.08.12    || ''Journal Club''
|-
|-
| 09.08.12   || Lachlan
| 04.05.23   || Chair: Sharif <br />  Speaker: Martin
|-
|-
| 16.08.12   || ''Cancelled''
| 11.05.23   || Chair: Audrey <br />  Speaker: Abhay
|-
|-
| 23.08.12    || ''Cancelled''
| 18.05.23  || Chair: <br />  Speaker:  
|- style="background:#c2fbd1"
| 30.08.12    || ''Journal Club''
|-
|-
| 06.09.12   || Guang
|- style="background:#7fffd4"
| 19.05.23   || CTCMS
|-
|-
| 13.09.12   || Megan
| 25.05.23   || Chair:  Megan / (Ada)<br />  Speaker: Rangika , Tuan
|- style="background:#c2fbd1"
| 20.09.12    || ''Journal Club''
|-
|-
| 27.09.12   || ''Joint Group Meeting''
| 01.06.23   || Honors student's Seminar
|-
|-
| 04.10.12   || David
| 08.06.23   || Chair: Yumeng<br />  Speaker: Patrick , Ashleigh and Claire
|-
|-
| 11.10.12   || Nanditha
| 15.06.23   ||   Chair      :  Solace Roche
|- style="background:#c2fbd1"
Speaker  :  Jiayu Li, Tanaya
| 18.10.12    || ''Journal Club''
|-
|-
| 25.10.12    || Alpesh
|- style="background:#7fffd4"
| 16.06.223  || CTCMS
|-
|-
| 01.11.12   || Evelyne
| 22.06.23   || Chair: Rangika<br />  Speaker: Solace roche,
|- style="background:#c2fbd1"
| 08.11.12    || ''Journal Club''
|-
|-
| 15.11.12   || Lachlan
| 29.06.23   || Seminar
|-
| 06.07.23    || Chair: Martin<br />  Speaker: , Sharif
|-
|-
| 22.11.12   || Guang
| 13.07.23   || Chair: Sharif<br />Speaker: Martin, Abhay
|- style="background:#c2fbd1"
| 29.11.12    || ''Journal Club''
|-
|-
| 06.12.12   || Megan
| 20.07.23   || Chair: Abhay<br /> Speaker: Alan 
|- style="background:yellow;color:orange"
|colspan="2" align="center"| '''''Summer Break''' (back in February 2013)''
|}


== Journals to be assigned for the Journal Clubs ==
|-
|- style="background:#7fffd4"
| 21.07.23    || CTCMS
|-
| 27.07.23    || SBB Seminar


''Select <u>up to 3</u> articles from your group of journals that you will briefly present in <u>less</u> than 10 min.''
|-
| 03.08.23    || Chair: Abhay<br />Speaker:  Rangika , Ada
|-
| 10.08.23    || Chair: Tuan<br />Speaker: Yumeng, Tye


 
|-
{| border="0" cellpadding="5" cellspacing="2"
| 17.08.23    || Chair:  Rangika <br /> Speaker:  Tanaya
|- style="background:#c9c9c9"
|-
|style="width:100px;background:#ffffff"| ||style="width:80px"|Guang||style="width:80px"|Pramod||style="width:80px"|Lachlan||style="width:80px"|Nandhita||style="width:80px"|Megan||style="width:80px"|David||style="width:80px"|Alpesh||style="width:80px"|Alan||style="width:80px"|Evelyne||style="width:80px"|Martin
|- style="background:#7fffd4"
| 18.08.23    || CTCMS
|-
| 24.08.23    || Chair: Tuan<br /> Speaker: Patrick, Zihan
|-
| 31.08.23    || Chair: Sharif<br /> Speaker: Martin, Sharif 
|-
| 07.09.23    || Chair: Martin<br />Speaker: Abhay, Tuan
|-
| 14.09.23    || Chair: Abhay<br />Speaker: Prof. Alan E. Mark
|-  
|-  
| 22.03.12 || Group 1  || Group 2  || Group 3  || Group 4  || Group 5  || Group 6  || Group 7  || Group 8  || &mdash;  || &mdash;
| 21.09.23    || Chair: Yumeng<br /> Speaker: Wilson, Morgan
|-
|-
| 12.04.12 || Group 2  || Group 3  || Group 4  || Group 5  || Group 6  || Group 7  || Group 8  || Group 9  || &mdash;  || &mdash;
|- style="background:#7fffd4"
| 22.09.23    || CTCMS
|-
|-
| 03.05.12 || Group 3 || Group 4  || Group 5  || Group 6  || Group 7  || Group 8  || Group 9  || Group 10 || Group 11 || &mdash;
| 28.09.23    || Chair: Tanaya<br /> Speaker: Martin, Sharif
|-
|-
| 24.05.12 || Group 4  || Group 5  || Group 6  || Group 7  || Group 8 || Group 9 || Group 10 || Group 11 || Group 12 || &mdash;
| 05.10.23    || Chair: Sharif<br /> Speaker: Frank, Wenbai  
|-
|-
| 14/21.06.12 || Group 5 || Group 6 || Group 7  || Group 8  || Group 9  || Group 10 || Group 11 || Group 12 || Group 1  || Group 2
| 12.10.23    || Chair: Ada<br /> Speaker:  
|-
|-
| 12.07.12 || Group 6  || Group 7 || Group 8  || Group 9  || Group 10 || Group 11 || Group 12 || Group 1  || Group 2  || Group 3
| 19.10.22    || Chair: <br /> Speaker:
|-
|-
| 02.08.12 || Group 7  || Group 8  || Group 9  || Group 10 || Group 11 || Group 12 || Group 1  || Group 2  || Group 3  || Group 4
|- style="background:#7fffd4"
| 20.10.23    || CTCMS
|-
|-
| 30.08.12 || Group 8  || Group 9 || Group 10 || Group 11 || Group 12 || Group 1  || Group 2  || Group 3  || Group 4  || Group 5
| 26.10.23    || Chair:  <br /> Speaker: Frank
|-
|-
| 20.09.12 || Group 9 || &mdash; || Group 11 || Group 12 || Group 1 || Group 2 || Group 3  || Group 4 || Group 5  || &mdash;
| 02.11.23    || Chair:  <br /> Speaker: No Speaker
|-
| 09.11.23    || Chair: Ada<br /> Speaker: Tanaya  
|-
|-
| 11.10.12 || Group 10  || &mdash;  || Group 12 || Group 1  || Group 2 || Group 3 || Group 4  || Group 5  || Group 6  || &mdash;
| 16.11.23    || Chair: Solace Roche<br /> Speaker: Wenbai
|-
|-
| 01.11.12 || Group 11  || &mdash;  || Group 1 || Group 2 || Group 3  || Group 4 || Group 5 || Group 6  || Group 7  || &mdash;
|- style="background:#7fffd4"
|}
| 17.11.23    || CTCMS
|-
| 23.11.23    || Chair: Rangika<br /> Speaker: Imamul
|-
| 30.11.23    || Chair: Frank<br /> Speaker: Ada
|-
 
== Journals to be assigned for the Journal Clubs ==




{| border="0" cellpadding="5" cellspacing="10"
|}{| border="0" cellpadding="5" cellspacing="10"
|-
|-
|style="width:250px"|'''Group 1'''<br>Science<br>J. Comput. Chem.<br>Angew. Chem. Int. Ed.
|style="width:200px"|'''Alpesh'''<br>J. Comput.-Aided Mol. Des. <br>Phys. Rev. Lett. <br>J. Mol. Biol. <br>Proteins       
|style="width:250px"|'''Group 2'''<br>Phys. Rev. Lett.<br>Structure<br> PLoS Comput. Biol.
|style="width:200px"|'''David''' <br>Angew. Chem. Int. Ed. <br>Biochim. Biophys. Acta Biomembr. <br>Mol. Cell         
|style="width:250px"|'''Group 3'''<br>Phys. Chem. Chem. Phys.<br>J. Mol. Biol.<br> Eur. Biophys. J.
|style="width:200px"|'''Evelyne'''<br>Chem. Commun. <br>Phys. Chem. Chem. Phys. <br>Nat. Struc. Mol. Biol. <br>Science     
|-
|style="width:200px"|'''Karmen'''<br>Nat. Chem. Biol.<br>Biophys. Chem. <br>Nature <br>Curr. Opin. Struct. Biol.
|style="width:250px"|'''Group 4'''<br>J. Phys. Chem. B<br>Langmuir<br>Chem. Commun.
|style="width:200px"|'''Nanditha'''<br>J. Chem. Theory Comput. <br>J. Phys. Chem. B <br>Biochemistry  <br>Proteins         
|style="width:250px"|'''Group 5'''<br>J. Am. Chem. Soc.<br>EMBO Rep.<br>Protein Sci.
|style="width:200px"|'''Lachlan'''<br>J. Biol. Chem.<br>Eur. Biophys. J.<br>FEBS Lett.<br>EMBO J.
|style="width:250px"|'''Group 6'''<br>Nat. Struc. Mol. Biol.<br>J. Chem. Phys.<br>J. Comput.-Aided Mol. Des.
|-
|style="width:250px"|'''Group 7'''<br>EMBO J.<br>J. Chem. Theory Comput.<br>Med. Chem. Commun.
|style="width:250px"|'''Group 8'''<br>Proc. Natl. Acad. Sci. USA<br>Nature<br>J. Phys. Chem. Lett.
|style="width:250px"|'''Group 9'''<br>Biochim. Biophys. Acta Biomembr.<br>Biochemistry<br>Biophys. Chem.
|-  
|-  
|style="width:250px"|'''Group 10'''<br>Biophys. J.<br>Mol. Cell<br>Curr. Opinin. Struct. Biol.
|style="width:200px"|'''Bertrand''' <br>FEBS J <br>Chem. Rev. <br> Soft Matter
|style="width:250px"|'''Group 11'''<br>J. Biol. Chem.<br>FEBS Lett.<br>Proteins
|style="width:200px"|'''Kasia''' <br>J. Comput. Chem. <br>Med. Chem. Commun. <br>Langmuir             
|style="width:250px"|'''Group 12'''<br>Nat. Chem. Biol.<br>Faraday Discuss.<br>FEBS J.
|style="width:200px"|'''Martin'''<br>J. Chem. Phys. <br>J. Phys. Chem. Lett. <br>Faraday Discuss.
|style="width:200px"|'''Michael'''<br>PLoS Comput. Biol.<br>J. Am. Chem. Soc.<br>EMBO Rep
|style="width:200px"|'''Alex'''<br>Proc. Natl. Acad. Sci. USA<br>Biophys. J.
|style="width:200px"|'''Glen'''<br>Bioinformatics <br>Structure
|}
|}


Latest revision as of 00:13, 14 November 2023

MD Group Meetings

This is the current roster of the MD Group weekly meeting. This is the most up-to-date version.

  • Please do not edit this without informing Abhay
  • Please add you talks for archive and reference reasons. This can be achieved by uploading the file (left hand toolbox) and linking to it.
    • If you get complaints about file size being to large - simply click upload anyway.


If you would like someone from another lab to give a seminar, you are welcome to suggest a (some) name(s). In this case, it would be a longer seminar (40-45 min + questions).


  • The meetings are held on Thursdays, every week at 09:30 am, except third Thursday of a month when there is CTCMS seminar at 09:30 AM in the AIBN Seminar Room.
  • Two speakers will be presenting on every meeting and talks should be 20 min each (questions included)
  • Everyone who is going to conference will be scheduled for a conference report (5–10 mins' talk) when back to the lab after the conference.
  • For the Journal Club, presentations are to be of a recent article from one of the assigned groups. Talks are 20 min long each (including questions).
  • The wiki pages Theoretical Seminars and Journal Club can bed used to find topics to be treated in seminars. Everyone is welcome to suggest and add new topics on these pages.
  • The joint meeting with Bostjan Kobe's, Luke Guddat's and Mikael Bodén's groups are every last Friday of the month in the seminar room 68-214 from 9 am to 11 am. There are 2 speakers per meeting. Talks should be 15–20 minutes long (+ discussion).


Inform Abhay if you swap with someone


Roster for 2022

Journals to be assigned for the Journal Clubs

Date Speakers
09.02.23 Chair: Sharif
Speaker: Tuan
16.02.23 -
23.02.23 Chair: Audrey
Speaker: Martin
24.02.23 CTCMS
02.03.23 Chair: Evelyne
Speaker: Aude
09.03.23 Chair: Alan
Speaker: Tuan
16.03.23 -
17.03.23 CTCMS
23.03.23 Chair: Martin
Speaker: Ada
30.03.23 Chair: Audrey
Speaker: Alan
06.04.23 Chair: Ada
Speaker: Yumeng
13.04.23 Chair: Zihan
Speaker: Rangika
20.04.23 Chair: Alan
Speaker: -
21.04.23 CTCMS
27.04.23 Chair: Evelyne
Speaker: Sharif
04.05.23 Chair: Sharif
Speaker: Martin
11.05.23 Chair: Audrey
Speaker: Abhay
18.05.23 Chair:
Speaker:
19.05.23 CTCMS
25.05.23 Chair: Megan / (Ada)
Speaker: Rangika , Tuan
01.06.23 Honors student's Seminar
08.06.23 Chair: Yumeng
Speaker: Patrick , Ashleigh and Claire
15.06.23   Chair      :  Solace Roche

Speaker  :  Jiayu Li, Tanaya

16.06.223 CTCMS
22.06.23 Chair: Rangika
Speaker: Solace roche,
29.06.23 Seminar
06.07.23 Chair: Martin
Speaker: , Sharif
13.07.23 Chair: Sharif
Speaker: Martin, Abhay
20.07.23 Chair: Abhay
Speaker: Alan
21.07.23 CTCMS
27.07.23 SBB Seminar
03.08.23 Chair: Abhay
Speaker: Rangika , Ada
10.08.23 Chair: Tuan
Speaker: Yumeng, Tye
17.08.23 Chair: Rangika
Speaker: Tanaya
18.08.23 CTCMS
24.08.23 Chair: Tuan
Speaker: Patrick, Zihan
31.08.23 Chair: Sharif
Speaker: Martin, Sharif
07.09.23 Chair: Martin
Speaker: Abhay, Tuan
14.09.23 Chair: Abhay
Speaker: Prof. Alan E. Mark
21.09.23 Chair: Yumeng
Speaker: Wilson, Morgan
22.09.23 CTCMS
28.09.23 Chair: Tanaya
Speaker: Martin, Sharif
05.10.23 Chair: Sharif
Speaker: Frank, Wenbai
12.10.23 Chair: Ada
Speaker:
19.10.22 Chair:
Speaker:
20.10.23 CTCMS
26.10.23 Chair:
Speaker: Frank
02.11.23 Chair:
Speaker: No Speaker
09.11.23 Chair: Ada
Speaker: Tanaya
16.11.23 Chair: Solace Roche
Speaker: Wenbai
17.11.23 CTCMS
23.11.23 Chair: Rangika
Speaker: Imamul
30.11.23 Chair: Frank
Speaker: Ada

{| border="0" cellpadding="5" cellspacing="10"

|- |style="width:200px"|Alpesh
J. Comput.-Aided Mol. Des.
Phys. Rev. Lett.
J. Mol. Biol.
Proteins |style="width:200px"|David
Angew. Chem. Int. Ed.
Biochim. Biophys. Acta Biomembr.
Mol. Cell |style="width:200px"|Evelyne
Chem. Commun.
Phys. Chem. Chem. Phys.
Nat. Struc. Mol. Biol.
Science |style="width:200px"|Karmen
Nat. Chem. Biol.
Biophys. Chem.
Nature
Curr. Opin. Struct. Biol. |style="width:200px"|Nanditha
J. Chem. Theory Comput.
J. Phys. Chem. B
Biochemistry
Proteins |style="width:200px"|Lachlan
J. Biol. Chem.
Eur. Biophys. J.
FEBS Lett.
EMBO J. |- |style="width:200px"|Bertrand
FEBS J
Chem. Rev.
Soft Matter |style="width:200px"|Kasia
J. Comput. Chem.
Med. Chem. Commun.
Langmuir |style="width:200px"|Martin
J. Chem. Phys.
J. Phys. Chem. Lett.
Faraday Discuss. |style="width:200px"|Michael
PLoS Comput. Biol.
J. Am. Chem. Soc.
EMBO Rep |style="width:200px"|Alex
Proc. Natl. Acad. Sci. USA
Biophys. J. |style="width:200px"|Glen
Bioinformatics
Structure |}

Other important dates

Items to Discuss at the Next Meeting

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