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== Linux command line docs ==


== Averaging/Effects of flexibility on ''X''-tensor/Alignment-tensor ==


* Bash Guide for Beginners [Bash-Beginners-Guide.pdf]


Inter-domain orientation and motions in VAT-N
* Advanced BASH-scripting guide
explored by residual dipolar couplings and 15N
backbone relaxation


Efficient determination of the most favoured
* GNU Linux Command Line Tools Summary
orientations of protein domains from paramagnetic
NMR data


Analysis of interdomain dynamics in a two-domain
protein using residual dipolar couplings together
with 15N relaxation data


Reconstruction of orientations of a moving protein
 
domain from paramagnetic data
== [http://cshprotocols.cshlp.org/ Cold Spring Harbor Protocols] ==
 
* [http://cshprotocols.cshlp.org/cgi/content/full/2007/6/pdb.prot4679?print=true General MALDI-MS protocol]
 
* [http://cshprotocols.cshlp.org/cgi/content/full/2009/2/pdb.prot5110?print=true In-Gel Trypsin Digest of Gel-Fractionated Proteins]
 
* [http://cshprotocols.cshlp.org/cgi/content/full/2007/3/pdb.prot4594?print=true Analysis of the Topology of Protein Complexes Using Cross-Linking and Mass Spectrometry]
 
* [http://cshprotocols.cshlp.org/cgi/content/full/2006/30/pdb.prot4662?print=true Direct Enzymatic Digestion of Protein Complexes for MS Analysis]
 
 
 
== [http://www.scientistsolutions.com/a31-protocolslist-proteomics.aspx more protocols] ==
 
[http://www.smbs.buffalo.edu/bch/researchfacil/protocols.htm MALDI and ZipTip protocol at Buffalo]
 
 
 
== other useful protocols ==
 
[http://compbio.chemistry.uq.edu.au/mediawiki/upload/8/87/DesaltTrypticPeptide.pdf Desalting of tryptic peptide mixtures using C18 Zip-tips]
 
[http://compbio.chemistry.uq.edu.au/mediawiki/upload/2/26/InGelDigProtocol.pdf In-gel Digestion of Coomassie-Stained Proteins from 1D or 2D Gels (No Reduction & Alkylation)]
 
[http://compbio.chemistry.uq.edu.au/mediawiki/upload/e/e1/Guanidination.pdf Richard L. Beardsley and James P. Reilly, Optimization of Guanidination Procedures for MALDI Mass Mapping, Anal. Chem., 2002, 74 (8), pp 1884–1890]

Latest revision as of 01:10, 27 May 2010

Linux command line docs

  • Bash Guide for Beginners [Bash-Beginners-Guide.pdf]
  • Advanced BASH-scripting guide
  • GNU Linux Command Line Tools Summary


Cold Spring Harbor Protocols


more protocols

MALDI and ZipTip protocol at Buffalo


other useful protocols

Desalting of tryptic peptide mixtures using C18 Zip-tips

In-gel Digestion of Coomassie-Stained Proteins from 1D or 2D Gels (No Reduction & Alkylation)

Richard L. Beardsley and James P. Reilly, Optimization of Guanidination Procedures for MALDI Mass Mapping, Anal. Chem., 2002, 74 (8), pp 1884–1890

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