Result of SNAPG: Difference between revisions
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== SNAPG Structure == | == SNAPG Structure == | ||
SNAPG protein structure obtained from ''Dario rerio'' organism comprises of 4 molecular chains (Chain A,B,C and D). | |||
In order to analyze protein structure of SNAPG, structural comparison to known protein structure is required. An insight to SNAPG structural arrangement provides various informative data on possible protein functions and interactions with another protein and/or DNA. Based on protein families database, Pfam at Sanger, it was found that SNAPG protein matched to Pfam-B protein families and consist of 2 domains, Pfam-B_7270 (PB007270) and Pfam-B_15198 (PB015189) respectively as shown in Figure 1. Both of 2 domains are associated with NSF attachment protein activity [http://www.ebi.ac.uk/interpro/IEntry?ac=IPR000744]. | In order to analyze protein structure of SNAPG, structural comparison to known protein structure is required. An insight to SNAPG structural arrangement provides various informative data on possible protein functions and interactions with another protein and/or DNA. Based on protein families database, Pfam at Sanger, it was found that SNAPG protein matched to Pfam-B protein families and consist of 2 domains, Pfam-B_7270 (PB007270) and Pfam-B_15198 (PB015189) respectively as shown in Figure 1. Both of 2 domains are associated with NSF attachment protein activity [http://www.ebi.ac.uk/interpro/IEntry?ac=IPR000744]. | ||
[[Image:PFam domains.png|thumb|Figure 1. Two domains of SNAPG protein]] | [[Image:PFam domains.png|thumb|Figure 1. Two domains of SNAPG protein (chain A)]] | ||
Revision as of 14:05, 10 June 2007
SNAPG Structure
SNAPG protein structure obtained from Dario rerio organism comprises of 4 molecular chains (Chain A,B,C and D).
In order to analyze protein structure of SNAPG, structural comparison to known protein structure is required. An insight to SNAPG structural arrangement provides various informative data on possible protein functions and interactions with another protein and/or DNA. Based on protein families database, Pfam at Sanger, it was found that SNAPG protein matched to Pfam-B protein families and consist of 2 domains, Pfam-B_7270 (PB007270) and Pfam-B_15198 (PB015189) respectively as shown in Figure 1. Both of 2 domains are associated with NSF attachment protein activity [1].
