Snap-gamma: sequence alignment with 1QQE:A

USR1:A(size=307) vs 1QQE:A(size=292)

Structure Alignment Rmsd = 3.3Å Z-Score = 7.1 Sequence identity = 19.4% Aligned/gap positions = 268/11

Sequence alignment based on structure alignment. Position numbers according to sequence (starting from 1) and according to PDB are given as SSSS/PPPP, SSSS - sequence, PPPP - PDB.

USR1:A - MOL_ID: 1; MOLECULE: GAMMA-SNAP; CHAIN: A, B, C, D; ENGINEERED: YES

1QQE:A - MOL_ID: 1; MOLECULE: VESICULAR TRANSPORT PROTEIN SEC17; CHAIN: A; ENGINEERED: YES; MUTATION: M1I; BIOLOGICAL_UNIT: MONOMER

 USR1:A    8/7     SEAHEHIAKAEKYLKT----SFX-KWKPD-YDSAASEYAKAAVAFKNAKQLEQAKDAYLQ
 1QQE:A    3/4     DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLK

 USR1:A   62/61    EAEAHANNRSLFHAAKAFEQAGXXLKDLQRXPEAVQYIEKASVXYVENGTPDTAAXALDR
 1QQE:A   63/64    AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE

 USR1:A  122/121   AGKLXEP--LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQ
 1QQE:A  123/124   LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYS

 USR1:A  180/179   KEKSXYKEXE-NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSE-DCAALE
 1QQE:A  183/184   KLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK

 USR1:A  238/237   DLLQAYDEQDEEQLLRVC-RSPLVTYXDNDYAKLAISLK
 1QQE:A  243/244   SLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIK

PDB file

link