Software: Difference between revisions
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'''*''' | ===Bioinformatics/Computational Biology/X-ray Crystallography rpm repositories==='''*''' | ||
**http://serine.umdnj.edu/~golharam/biorpms/downloads.php | **http://serine.umdnj.edu/~golharam/biorpms/downloads.php | ||
**http://biopackages.net/ | **http://biopackages.net/ | ||
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Amusements/Games | Amusements/Games | ||
Amusements/Graphics | Amusements/Graphics | ||
Applications/Archiving | Applications/Archiving | ||
Applications/Communications | Applications/Communications | ||
Applications/Databases | Applications/Databases | ||
Applications/Editors | Applications/Editors | ||
Applications/Emulators | Applications/Emulators | ||
Applications/Engineering | Applications/Engineering | ||
Applications/File | Applications/File | ||
Applications/Internet | Applications/Internet | ||
Applications/Multimedia | Applications/Multimedia | ||
Applications/Productivity | Applications/Productivity | ||
Applications/Publishing | Applications/Publishing | ||
Applications/System | Applications/System | ||
Applications/Text | Applications/Text | ||
Development/Debuggers | Development/Debuggers | ||
Development/Languages | Development/Languages | ||
Development/Libraries | Development/Libraries | ||
Development/System | Development/System | ||
Development/Tools | Development/Tools | ||
Documentation | Documentation | ||
System Environment/Base | System Environment/Base | ||
System Environment/Daemons | System Environment/Daemons | ||
System Environment/Kernel | System Environment/Kernel | ||
System Environment/Libraries | System Environment/Libraries | ||
System Environment/Shells | System Environment/Shells | ||
User Interface/Desktops | User Interface/Desktops | ||
User Interface/X | User Interface/X | ||
User Interface/X Hardware Support | User Interface/X Hardware Support |
Revision as of 02:44, 12 August 2007
Software that is installed or is to be installed on the workstations
Packages tagged src will be added to a local yum repository on compbio bold = newly added Related: SEE - yum_repo and building_rpms
Package name | Installation state | Notes |
---|---|---|
checkinstall | Y | See checkinstall_patch. SEE: /usr/src/redhat/RPMS/x86_64/checkinstall-1.6.1-1.x86_64.rpm |
kile | Y | |
apbs | N | src |
molmol | N | Will buy beer if you can get this one working |
pymol | N | src - no up-to-date binaries are provided now without a license |
pdfedit | Y | |
emacs | Y | |
gnuplot | Y | |
gtk | Y | |
gtk-devel | Y | |
xplor-nih | N | binary only |
clustal | N | src and binary |
modeller | N | REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm |
openGL | Y | is this free-glut ? |
rasmol | N | src and binary |
seqview | N | Need url please |
treeview | N | src |
electric fence library | Y | |
phylip | N | src and binary |
blast | N | BLAST and wwwblast + Human EST DB for testing |
VMD | N | src |
povray | Y | src. See - |
mead | N | Need url please |
spdb | N | Don't believe is possible - do it yourself/show me !!! See * |
rxvt | Y | |
xterm | Y | |
GROMACS | N | src |
GROMOS | N | src |
gv | Y | |
xemacs | Y | |
zsh | Y | |
vim | Y | |
lam_mpi | N | src |
mplayer | Y | No codecs installed |
vlc | Y | |
fftw | N | src |
R | Y | |
xmms-mp3 | Y | installed AUDACIOUS instead |
flash | Y | |
shockwave | ? | Is this available for linux? Does flash take care of this? |
acrobat | Y | |
xmgrace | N | src |
firefox | Y | |
thunderbird | Y | |
nedit | Y | |
java | Y | Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient location SOON. |
xine | Y |
===Bioinformatics/Computational Biology/X-ray Crystallography rpm repositories===*
Fedora Software Groups
- To create rpm's for the correct group
Amusements/Games
Amusements/Graphics
Applications/Archiving
Applications/Communications
Applications/Databases
Applications/Editors
Applications/Emulators
Applications/Engineering
Applications/File
Applications/Internet
Applications/Multimedia
Applications/Productivity
Applications/Publishing
Applications/System
Applications/Text
Development/Debuggers
Development/Languages
Development/Libraries
Development/System
Development/Tools
Documentation
System Environment/Base
System Environment/Daemons
System Environment/Kernel
System Environment/Libraries
System Environment/Shells
User Interface/Desktops
User Interface/X
User Interface/X Hardware Support