Software
From MDWiki
Jump to navigationJump to search
Software on the workstations
*** = HAS BEEN INSTALLED Anything that has to be built from SRC will be added to a local yum repository on compbio bold = newly added
| Name | Installed | Notes |
|---|---|---|
| kile | Y | |
| apbs | N | From src |
| molmol | N | Will buy beer if you can get this one working |
| pymol | N | From src |
| pdfedit | Y | |
| emacs | Y | |
| gnuplot | Y | |
| gtk | Y | |
| gtk-devel | Y | |
| xplor-nih | N | Binary only |
| clustal | N | From src/binary |
| modeller | N | REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm |
| openGL | Y | free-glut ??? |
| rasmol | N | src and binary |
| seqview | N | COULD SOMEONE PROVIDE ME A URL |
| treeview | N | src |
| electric fence library | Y | |
| phylip | N | src and binary |
| blast | N | BLAST and wwwblast + Human EST DB for testing |
| VMD | N | src |
| povray | N | src |
| mead | N | Need url please |
| spdb | N | Don't believe is possible - do it yourself/show me !!! See * |
| rxvt | Y | |
| xterm | Y | |
| GROMACS | N | src |
| GROMOS | N | src |
| gv | Y | |
| xemacs | Y | |
| zsh | Y | |
| vim | Y | |
| lam_mpi | N | src |
| mplayer | Y | No codecs installed |
| vlc | Y | |
| fftw | N | src |
| R | Y | |
| xmms-mp3 | Y | installed AUDACIOUS instead |
| flash | Y | |
| shockwave | ? | Is this available on linux? I think flash takes care of this. |
| acrobat | Y | |
| xmgrace | N | src |
| firefox | Y | |
| thunderbird | Y | |
| nedit | Y | |
| java | Y | Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient |
| xine | Y |
