Software

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Software that is installed or is to be installed on the workstations

Packages tagged src will be added to a local yum repository on compbio
bold = newly added
Related: SEE - yum_repo and building_rpms
Package name Installation state Notes
checkinstall Y See checkinstall_patch. SEE: /usr/src/redhat/RPMS/x86_64/checkinstall-1.6.1-1.x86_64.rpm
kile Y
apbs N src
molmol N Will buy beer if you can get this one working
pymol N src - no up-to-date binaries are provided now without a license
pdfedit Y
emacs Y
gnuplot Y
gtk Y
gtk-devel Y
xplor-nih N binary only
clustal N src and binary
modeller N REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm
openGL Y is this free-glut ?
rasmol N src and binary
seqview N Need url please
treeview N src
electric fence library Y
phylip N src and binary
blast N BLAST and wwwblast + Human EST DB for testing
VMD N src
povray N src
mead N Need url please
spdb N Don't believe is possible - do it yourself/show me !!! See *
rxvt Y
xterm Y
GROMACS N src
GROMOS N src
gv Y
xemacs Y
zsh Y
vim Y
lam_mpi N src
mplayer Y No codecs installed
vlc Y
fftw N src
R Y
xmms-mp3 Y installed AUDACIOUS instead
flash Y
shockwave ? Is this available for linux? Does flash take care of this?
acrobat Y
xmgrace N src
firefox Y
thunderbird Y
nedit Y
java Y Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient location SOON.
xine Y


* I have found a few handy rpm repositories: