Software
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Software that is installed or is to be installed on the workstations
Packages tagged src will be added to a local yum repository on compbio bold = newly added Related: SEE - yum_repo and building_rpms
| Package name | Installation state | Notes |
|---|---|---|
| checkinstall | Y | See checkinstall_patch. SEE: /usr/src/redhat/RPMS/x86_64/checkinstall-1.6.1-1.x86_64.rpm |
| kile | Y | |
| apbs | N | src |
| molmol | N | Will buy beer if you can get this one working |
| pymol | N | src - no up-to-date binaries are provided now without a license |
| pdfedit | Y | |
| emacs | Y | |
| gnuplot | Y | |
| gtk | Y | |
| gtk-devel | Y | |
| xplor-nih | N | binary only |
| clustal | N | src and binary |
| modeller | N | REQUIRES LIC: # env KEY_MODELLER9v2=XXXX rpm -Uvh modeller-9v2-1.i386.rpm |
| openGL | Y | is this free-glut ? |
| rasmol | N | src and binary |
| seqview | N | Need url please |
| treeview | N | src |
| electric fence library | Y | |
| phylip | N | src and binary |
| blast | N | BLAST and wwwblast + Human EST DB for testing |
| VMD | N | src |
| povray | Y | src. See - |
| mead | N | Need url please |
| spdb | N | Don't believe is possible - do it yourself/show me !!! See * |
| rxvt | Y | |
| xterm | Y | |
| GROMACS | N | src |
| GROMOS | N | src |
| gv | Y | |
| xemacs | Y | |
| zsh | Y | |
| vim | Y | |
| lam_mpi | N | src |
| mplayer | Y | No codecs installed |
| vlc | Y | |
| fftw | N | src |
| R | Y | |
| xmms-mp3 | Y | installed AUDACIOUS instead |
| flash | Y | |
| shockwave | ? | Is this available for linux? Does flash take care of this? |
| acrobat | Y | |
| xmgrace | N | src |
| firefox | Y | |
| thunderbird | Y | |
| nedit | Y | |
| java | Y | Currently in: /opt/jdk1.6.0_02/ WILL move someone more convenient location SOON. |
| xine | Y |
*I have found a few handy rpm repositories:
Fedora Software Groups
- To create rpm's for the correct group
Amusements/Games Amusements/Graphics Applications/Archiving Applications/Communications Applications/Databases Applications/Editors Applications/Emulators Applications/Engineering Applications/File Applications/Internet Applications/Multimedia Applications/Productivity Applications/Publishing Applications/System Applications/Text Development/Debuggers Development/Languages Development/Libraries Development/System Development/Tools Documentation System Environment/Base System Environment/Daemons System Environment/Kernel System Environment/Libraries System Environment/Shells User Interface/Desktops User Interface/X User Interface/X Hardware Support
