Structure: Kenn

Structure Summary

NESG ID: GR165 PDB ID: 2ph1 Deposition date: 2007-04-10 Common Name: Nucleotide-binding protein Length (a.a.): 240 Organism: Archaeoglobus fulgidus SwissProt / TrEMBL ID: O30288_ARCFU Oligomerization: monomer Molecular weight: 26087

Secondary Structure Elements: alpha helices: 7-14, 32-45, 61-65, 111-122, 143-151, 167-178, 211-217, 230-237 beta strands: 83-84, 91-93, 50-54, 131-135, 20-24, 155-160, 184-189, 222-225, 74-76, 79-81, 194-195, 202-203

Resolution: 2.70 Å R-factor: 0.217 R-free: 0.278

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EMI result

The P-loop connecting b1 and a1, has well conserved sequences, and its amino acid side chains exhibit the same conformations among all other proteins with the GXXXXGKT motif.Other conserved motifs are also observed in MinD. The Walker B motif (residues 118±121) is located near the terminus of b5, and has the modi®ed sequence, Asp-XPro- Ala.

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NUBP2 Front view

NUBP2 Top view

NUBP2 Back view

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The alignment of 2ph1 and 1g3q

The structure of 1g3q is the most similar to 2ph1 according to the result from Dali.This figure shows the alignment of 2ph1 and 1g3q with RMS 0.55.

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The secondary structure of 2ph1

This picture shows the secondary structure of 2ph1, the alpha helixes were shown in purple, and the beta sheets are shown in yellow.

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ATP binding to 2ph1

The ATP molocule was binding to the p-loop of 2ph1.

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