Theoretical Seminars and Journal Club: Difference between revisions

From MDWiki
Jump to navigationJump to search
Line 18: Line 18:
2. Structural Determination - Mitchell
2. Structural Determination - Mitchell


3. How to define Clusters and what can we learn from it on the protein properties? - Itamar


----
----

Revision as of 05:45, 26 August 2008

Schedule

date | main presenter | topic


See the Group meeting schedule.



Suggested Topics

name of topic | suggestion by


1. Soft Core non-bonded interactions - Alpesh

2. Structural Determination - Mitchell

3. How to define Clusters and what can we learn from it on the protein properties? - Itamar


The paper pool

Author | Title | Topic area | DOI URL |


1. BEUTLER TC, MARK AE, VANSCHAIK RC, et al. AVOIDING SINGULARITIES AND NUMERICAL INSTABILITIES IN FREE-ENERGY CALCULATIONS BASED ON MOLECULAR SIMULATIONS. CHEMICAL PHYSICS LETTERS, 1994, 222 (6) : 529-539. http://dx.doi.org/10.1016/0009-2614(94)00397-1

2. Frank Alber, ­ Friedrich Förster, ­ Dmitry Korkin, Maya Topf and ­ Andrej Sali Integrating Diverse Data for Structure Determination of Macromolecular Assemblies Annual Review of Biochemistry http://dx.doi.org/10.1146/annurev.biochem.77.060407.135530

3. Tropp J. (1980) Dipolar relaxation and nuclear Overhauser effects in nonrigid molecules: The effect of fluctuating internuclear distances. J. Chem. Phys. 72, 6035 http://link.aip.org/link/?JCPSA6/72/6035/1

4. Daura X, Antes I, van Gunsteren WF, Thiel W, Mark AE. (1999) The effect of motional averaging on the calculation of NMR-derived structural properties. Proteins 36(4), 542-55 http://dx.doi.org/10.1002/(SICI)1097-0134(19990901)36:4<542::AID-PROT17>3.0.CO;2-M