PROTEIN FUNCTION ANALYSIS: Difference between revisions
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http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/profunc/GetResults.pl?source=profunc&user_id=ay64&code=075902 | http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/profunc/GetResults.pl?source=profunc&user_id=ay64&code=075902 | ||
SNAP-gamma motifs are expressed during endocytosis/exocytosis process: | SNAP-gamma motifs are expressed during endocytosis/exocytosis process: | ||
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http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?ev_code=aca&ont=biological_process&session_id=562b1180740634&view=details&search_constraint=gp&gp=Q99747 | |||
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8774&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum#gengene | http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8774&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum#gengene | ||
Revision as of 00:53, 2 June 2007
PDB databases of SNAP-gamma (2ifu)
This database contains resources for studying the structures of biological macromolecules and their relationships to sequence and function. The source of SNAP-gamma protein sequence has been obtained from Zebrafish (Brachydanio rerio). Links: http://www.rcsb.org/pdb/explore.do?structureId=2IFU
SNAP-gamma sequence structure of 2ifu domain chain A: http://www.rcsb.org/pdb/explore/sequence.do?structureId=2IFU&chainId=A&domainID=2IFUAa&domainMethod=pdp&structMethod=d&allEntities=&component=domain#2IFUAa
General ProFunc Results for SNAP-gamma:
SNAP-gamma motifs are expressed during endocytosis/exocytosis process:
http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl
Genes encoded SNAP-gamma are conserved in eukaryotes:
Mammalian Orthology
http://www.informatics.jax.org/searches/homology_report.cgi?_Organism_key=1&id=MGI:104561
UniProt Gamma-soluble NSF attachment protein on human
http://www.ebi.uniprot.org/uniprot-srv/extendedView.do?proteinId=SNAG_HUMAN&pager.offset=
Entrez Gene from NCBI overview for Gamma-soluble NSF attachment protein on human
The Gene Ontology Term
1. Biological Function/Process
- intra-Golgi vesicle-mediated transport
- membrane fusion
- protein complex assembly
- protein stabilization
- intracellular protein transport
Links:
2. Cellular Component
- membrane fraction
- mitochondrion
- Golgi apparatus
- endoplasmic reticulum
3.