PROTEIN FUNCTION ANALYSIS: Difference between revisions
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General ProFunc Results for | == Introduction == | ||
SNAP-gamma is located on chromosome 18, location 18p11.22, 10,516,031-10,540,371. This protein belongs to the SNAP family and can be found on the cellular compartment; membrane and peripheral membrane protein (by similarity). | |||
PDB databases of SNAP-gamma (2ifu) | |||
This database contains resources for studying the structures of biological macromolecules and their relationships to sequence and function. The source of SNAP-gamma protein sequence has been obtained from Zebrafish (''Brachydanio rerio''). | |||
Links: http://www.rcsb.org/pdb/explore.do?structureId=2IFU | |||
SNAP-gamma sequence structure of 2ifu domain chain A: http://www.rcsb.org/pdb/explore/sequence.do?structureId=2IFU&chainId=A&domainID=2IFUAa&domainMethod=pdp&structMethod=d&allEntities=&component=domain#2IFUAa | |||
General ProFunc Results for SNAP-gamma: | |||
http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/profunc/GetResults.pl?source=profunc&user_id=ay64&code=075902 | http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/profunc/GetResults.pl?source=profunc&user_id=ay64&code=075902 | ||
[[Details on ProFunc]] | |||
SNAP-gamma motifs are expressed during endocytosis/exocytosis process: | |||
http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl | http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl | ||
Genes encoded SNAP-gamma are conserved in eukaryotes: | |||
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=homologene&dopt=HomoloGene&list_uids=2838 | |||
Mammalian Orthology | |||
http://www.informatics.jax.org/searches/homology_report.cgi?_Organism_key=1&id=MGI:104561 | |||
UniProt Gamma-soluble NSF attachment protein on human | |||
http://www.ebi.uniprot.org/uniprot-srv/extendedView.do?proteinId=SNAG_HUMAN&pager.offset= | |||
Entrez Gene from NCBI overview for Gamma-soluble NSF attachment protein on human | |||
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8774&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum | |||
== Function by Similarity == | |||
This functions are according to Gene Ontology: | |||
1. Biological Function/Process | |||
- intra-Golgi vesicle-mediated transport | |||
- membrane fusion | |||
- protein complex assembly | |||
- protein stabilization | |||
- intracellular protein transport | |||
Links: | |||
http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?ev_code=aca&ont=biological_process&session_id=562b1180740634&view=details&search_constraint=gp&gp=Q99747 | |||
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8774&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum#gengene | |||
2. Cellular Component | |||
- membrane fraction | |||
- mitochondrion | |||
- Golgi apparatus | |||
- endoplasmic reticulum | |||
Links: | |||
http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?ev_code=aca&ont=cellular_component&session_id=562b1180740634&view=details&search_constraint=gp&gp=Q99747 | |||
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8774&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum#gengene | |||
3. Molecular Function | |||
- protein binding | |||
- intracellular transport activity | |||
Links: | |||
http://amigo.geneontology.org/cgi-bin/amigo/go.cgi?ev_code=aca&ont=molecular_function&session_id=562b1180740634&view=details&search_constraint=gp&gp=Q99747 | |||
http://www.ncbi.nlm.nih.gov/sites/entrez?Db=gene&Cmd=ShowDetailView&TermToSearch=8774&itool=EntrezSystem2.PEntrez.Gene.Gene_ResultsPanel.Gene_RVDocSum#gengene | |||
[http://www.genecards.org/cgi-bin/cardsearch.pl?search=snap+gamma&search_type=kwd&mini=yes&speed=fast#results gene card] |
Latest revision as of 03:42, 2 June 2007
Introduction
SNAP-gamma is located on chromosome 18, location 18p11.22, 10,516,031-10,540,371. This protein belongs to the SNAP family and can be found on the cellular compartment; membrane and peripheral membrane protein (by similarity).
PDB databases of SNAP-gamma (2ifu)
This database contains resources for studying the structures of biological macromolecules and their relationships to sequence and function. The source of SNAP-gamma protein sequence has been obtained from Zebrafish (Brachydanio rerio). Links: http://www.rcsb.org/pdb/explore.do?structureId=2IFU
SNAP-gamma sequence structure of 2ifu domain chain A: http://www.rcsb.org/pdb/explore/sequence.do?structureId=2IFU&chainId=A&domainID=2IFUAa&domainMethod=pdp&structMethod=d&allEntities=&component=domain#2IFUAa
General ProFunc Results for SNAP-gamma:
SNAP-gamma motifs are expressed during endocytosis/exocytosis process:
http://www.ebi.ac.uk/thornton-srv/databases/cgi-bin/pdbsum/GetPage.pl
Genes encoded SNAP-gamma are conserved in eukaryotes:
Mammalian Orthology
http://www.informatics.jax.org/searches/homology_report.cgi?_Organism_key=1&id=MGI:104561
UniProt Gamma-soluble NSF attachment protein on human
http://www.ebi.uniprot.org/uniprot-srv/extendedView.do?proteinId=SNAG_HUMAN&pager.offset=
Entrez Gene from NCBI overview for Gamma-soluble NSF attachment protein on human
Function by Similarity
This functions are according to Gene Ontology:
1. Biological Function/Process
- intra-Golgi vesicle-mediated transport
- membrane fusion
- protein complex assembly
- protein stabilization
- intracellular protein transport
Links:
2. Cellular Component
- membrane fraction
- mitochondrion
- Golgi apparatus
- endoplasmic reticulum
Links:
3. Molecular Function
- protein binding
- intracellular transport activity
Links: