2gnx BlastP: Difference between revisions

From MDWiki
Jump to navigationJump to search
No edit summary
 
No edit summary
 
(14 intermediate revisions by 2 users not shown)
Line 1: Line 1:
Mouse Protein Subcellular Localization Database
BLAST Results
BLASTP 2.2.12 [Aug-07-2005]
BLASTP 2.2.12 [Aug-07-2005]


Reference:
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,  
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,  
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),  
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman  
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
(1997), "Gapped BLAST and PSI-BLAST: a new generation of  
programs", Nucleic Acids Res. 25:3389-3402.
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Query=
Reference:
        (323 letters)
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei
 
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Database: RIKEN IPS7 Protein Sequences
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
          33,451 sequences; 15,064,402 total letters
protein database searches with composition-based statistics
 
and other refinements", Nucleic Acids Res. 29:2994-3005.
Searching..................................................done
 
E = has experimental SCL data
L = has literature-mined SCL data
O = has SCL data from external resources
P = has predicted SCL data
 
*** denotes a protein that maps, with high-confidence, to a transcriptional unit that may exhibit variable membrane organization.
 
 
                                                                Score    E
Sequences producing significant alignments:                      (bits) Value SCL Data Protein Class
 
PA157757.1|Unknown (protein for MGC:86070)\                          597  e-171 P   Soluble, non-secreted protein
PA157757.12|hypothetical protein\                                    551  e-157 P   Soluble, non-secreted protein
PA157757.2|hypothetical protein\                                      230  1e-60 P   Type II membrane protein
PA72427.1|neuronal apoptosis inhibitory protein\                      30  3.1  OP   Soluble, non-secreted protein
PA177473.19|RalGDS-like factor\                                        29  5.3  OP   Soluble, non-secreted protein
PA82764.1|YY1 transcription factor\                                    29  5.3  LOP   Soluble, non-secreted protein
 
 
>PA157757.1|Unknown (protein for MGC:86070)\
          Length = 445
 
Score =  597 bits (1538), Expect = e-171
Identities = 299/323 (92%), Positives = 299/323 (92%)
 
Query: 1  PHLSEQLCFFVQARXEIADFYEKXYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP 60
          PHLSEQLCFFVQAR EIADFYEK YALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP
Sbjct: 123 PHLSEQLCFFVQARMEIADFYEKMYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP 182
 
Query: 61  LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG 120
          LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG
Sbjct: 183 LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG 242
 
Query: 121 GQSQKAVQPPHXXXXXXXXXXXXXXXXXXYFHEALSRQTTASEXKALTAKANPDLFGKIS 180
          GQSQKAVQPPH                  YFHEALSRQTTASE KALTAKANPDLFGKIS
Sbjct: 243 GQSQKAVQPPHLFLWLMKLKTMLLAKFSFYFHEALSRQTTASEMKALTAKANPDLFGKIS 302
 
Query: 181 SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVXHWP 240
          SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPV HWP
Sbjct: 303 SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMHWP 362
 
Query: 241 NVIXIXTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFISF 300
          NVI I TDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFISF
Sbjct: 363 NVIMIMTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFISF 422
 
Query: 301 LNELSLALKNPKVFASLKPGSKG 323
          LNELSLALKNPKVFASLKPGSKG
Sbjct: 423 LNELSLALKNPKVFASLKPGSKG 445
 
 
 
 
>PA157757.12|hypothetical protein\
          Length = 430
 
Score =  551 bits (1419), Expect = e-157
Identities = 275/299 (91%), Positives = 275/299 (91%)
 
Query: 1  PHLSEQLCFFVQARXEIADFYEKXYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP 60
          PHLSEQLCFFVQAR EIADFYEK YALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP
Sbjct: 123 PHLSEQLCFFVQARMEIADFYEKMYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSP 182
 
Query: 61  LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG 120
          LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG
Sbjct: 183 LESSFQLEVGVLSHLLKAQAQISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFG 242
 
Query: 121 GQSQKAVQPPHXXXXXXXXXXXXXXXXXXYFHEALSRQTTASEXKALTAKANPDLFGKIS 180
          GQSQKAVQPPH                  YFHEALSRQTTASE KALTAKANPDLFGKIS
Sbjct: 243 GQSQKAVQPPHLFLWLMKLKTMLLAKFSFYFHEALSRQTTASEMKALTAKANPDLFGKIS 302
 
Query: 181 SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVXHWP 240
          SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPV HWP
Sbjct: 303 SFIRKYDAANVSLIFDNRGSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVMHWP 362
 
Query: 241 NVIXIXTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFIS 299
          NVI I TDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFIS
Sbjct: 363 NVIMIVTDRASDLNSLEKVVHFYDDKVQSTYFLTRPEPHFTIVVIFESKKSERDSHFIS 421
 
 
 
 
>PA157757.2|hypothetical protein\
          Length = 261
 
Score =  230 bits (586), Expect = 1e-60
Identities = 116/135 (85%), Positives = 116/135 (85%)
 
Query: 21  YEKXYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSPLESSFQLEVGVLSHLLKAQA 80
          YEK YALSTQKFINTEELVSTLDTILRKYSSRFHHPILSPLESSFQLEVGVLSHLLKAQA
Sbjct: 87  YEKMYALSTQKFINTEELVSTLDTILRKYSSRFHHPILSPLESSFQLEVGVLSHLLKAQA 146
 
Query: 81  QISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFGGQSQKAVQPPHXXXXXXXXX 140
          QISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFGGQSQKAVQPPH       
Sbjct: 147 QISEWKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFGGQSQKAVQPPHLFLWLMKLK 206
 
Query: 141 XXXXXXXXXYFHEAL 155
                    YFHEAL
Sbjct: 207 TMLLAKFSFYFHEAL 221
 
 
 
 
>PA72427.1|neuronal apoptosis inhibitory protein\
          Length = 1447
 
Score = 29.6 bits (65), Expect = 3.1
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
 
Query: 208  YHHPHSY---REAPKGVDQYPAVVS-LPSDRPVXHWPNVIXIXTDRASDLNSLEKVV--- 260
            +H+ H +  +E    +D  P V+S LP + P  H    + I T  SDL+ L K++ 
Sbjct: 1139 FHNLHKFLGLKELCVRLDSKPDVLSVLPGEFPNLHHMEKLSIRTSTESDLSKLVKLIQNS 1198
 
Query: 261  ---HFYDDKVQSTYFLTRPEPHFTIVV----IFESKKSERDSHFISFLNEL 304
              H +  K    FL+  EP  T++    + E + S R    ++F+N L
Sbjct: 1199 PNLHVFHLKCN---FLSNCEPLMTVLASCKKLREIEFSGRCFEAMTFVNIL 1246
 
 
 
 
>PA177473.19|RalGDS-like factor\
          Length = 778
 
Score = 28.9 bits (63), Expect = 5.3
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
 
Query: 50  SSRFHHPI-----LSPLESSFQLEVGVLS----HLLKAQAQISEWKFLPSLVTLHNAHT 99
          +SR + P+    L P  SS +L  G L    HLL A+  ++  F P+L+  H A T
Sbjct: 70  TSRQYRPLDPLAPLPPPRSSRRLRAGTLEALVRHLLDARTAGADMMFTPALLATHRAFT 128
 
 
 
 
>PA82764.1|YY1 transcription factor\
          Length = 414


Score = 28.9 bits (63), Expect = 5.3
RID: 6T33UXG4012
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)


Query: 199 GSESFQGHGYHHPHSYREAPKGVDQYPAVVSLPSDRPVXHWPNVIXIXT 247
          G    GH +HH H +  P  +  P V  P+  V H  VI + T
Sbjct: 64  GGHGHAGHHHHHHHHHHHHPPMIALQPLVTDDPTQ--VHHHQEVILVQT 110


Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
          5,035,888 sequences; 1,742,339,864 total letters


If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports


Query= 
Length=445


  Database: RIKEN IPS7 Protein Sequences
[[Image:blastp.gif]]
    Posted date:  Jul 19, 2005  2:33 PM
  Number of letters in database: 15,064,402
  Number of sequences in database:  33,451
 
Lambda    K      H
  0.318    0.132    0.390


Gapped
Lambda    K      H
  0.267  0.0410    0.140


Sequences producing significant alignments: 
   
{| border="1"
|-
|
|
|
| Score (Bits)
| E Value
|-
| ref
| XP_001163972.1
| PREDICTED: similar to FLJ32549 protein [Pan
| 850
| 0.0
|-
| ref
| XP_001116860.1
| PREDICTED: hypothetical protein isoform 1 [M
| 848
| 0.0
|-
| ref
| NP_689653.3
| hypothetical protein LOC144577 [Homo sapiens...
| 847
| 0.0
|-
| gb
| AAH36246.1
| FLJ32549 protein [Homo sapiens]
| 846
| 0.0
|-
| ref
| XP_001116875.1
| PREDICTED: hypothetical protein isoform 3 [M
| 843
| 0.0
|-
| ref
| XP_531657.2
| PREDICTED: hypothetical protein XP_531657 [Cani
| 827
| 0.0
|-
| ref
| XP_615557.3
| PREDICTED: hypothetical protein [Bos taurus]
| 823
| 0.0
|-
| gb
| EDL24424.1
| cDNA sequence BC048403, isoform CRA_a [Mus muscul
| 803
| 0.0
|-
| ref
| NP_766610.2
| hypothetical protein LOC270802 [Mus musculus...
| 803
| 0.0
|-
| ref
| XP_576234.2
| PREDICTED: hypothetical protein [Rattus norv...
| 802
| 0.0
|-
| ref
| XP_001364942.1
| PREDICTED: hypothetical protein [Monodelphis
| 797
| 0.0
|-
| ref
| XP_416063.1
| PREDICTED: hypothetical protein [Gallus gallus]
| 796
| 0.0
|-
| dbj
| BAC39804.1
| unnamed protein product [Mus musculus]
| 760
| 0.0
|-
| ref
| XP_001116868.1
| PREDICTED: hypothetical protein isoform 2 [M
| 743
| 0.0
|-
| ref
| NP_001085035.1
| hypothetical protein LOC432102 [Xenopus l...
| 697
| 0.0
|-
| ref
| NP_001025261.1
| hypothetical protein LOC555715 [Danio rer...
| 665
| 0.0
|-
| ref
| NP_001076454.1
| hypothetical protein LOC100005809 [Danio ...
| 661
| 0.0
|-
| ref
| XP_001331282.1
| PREDICTED: hypothetical protein [Danio rerio
| 598
| 2e-169
|-
| emb
| CAG12393.1
| unnamed protein product [Tetraodon nigroviridis]
| 593
| 8e-168
|-
| pdb
| 2GNX
| A  Chain A, X-Ray Structure Of A Hypothetical Protein...
| 554
| 3e-156
|-
| dbj
| BAE41440.1
| unnamed protein product [Mus musculus]
| 508
| 2e-142
|-
| ref
| NP_001038719.1
| hypothetical protein LOC692281 [Danio rer...
| 357
| 1e-96
|-
| ref
| XP_624797.1
| PREDICTED: hypothetical protein [Apis mellifera
| 235
| 3e-60
|-
| ref
| XP_974676.1
| PREDICTED: hypothetical protein [Tribolium cast
| 232
| 5e-59
|-
| ref
| XP_001193974.1
| PREDICTED: hypothetical protein [Strongyloce
| 208
| 5e-52
|-
| ref
| XP_797380.2
| PREDICTED: hypothetical protein, partial [St...
| 207
| 2e-51
|-
| dbj
| BAE37112.1
| unnamed protein product [Mus musculus] >dbj B...
| 134
| 2e-29
|-
| gb
| EDL24425.1
| cDNA sequence BC048403, isoform CRA_b [Mus muscul
| 132
| 6e-29
|-
| ref
| XP_642387.1
| hypothetical protein DDBDRAFT_0205477 [Dicty...
| 87.8
| 1e-15
|-
| emb
| CAJ08583.1
| hypothetical protein, conserved [Leishmania majo
| 36.6
| 3.5
|-
|}


Matrix: BLOSUM62
return to [[Functional Analysis]]
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,633,615
Number of Sequences: 33451
Number of extensions: 319325
Number of successful extensions: 769
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 764
Number of HSP's gapped (non-prelim): 6
length of query: 323
length of database: 15,064,402
effective HSP length: 101
effective length of query: 222
effective length of database: 11,685,851
effective search space: 2594258922
effective search space used: 2594258922
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)

Latest revision as of 23:54, 11 June 2007

BLASTP 2.2.12 [Aug-07-2005]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.

Reference: Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.

RID: 6T33UXG4012


Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 

          5,035,888 sequences; 1,742,339,864 total letters

If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports

Query= Length=445

Blastp.gif


Sequences producing significant alignments:

Score (Bits) E Value
ref XP_001163972.1 PREDICTED: similar to FLJ32549 protein [Pan 850 0.0
ref XP_001116860.1 PREDICTED: hypothetical protein isoform 1 [M 848 0.0
ref NP_689653.3 hypothetical protein LOC144577 [Homo sapiens... 847 0.0
gb AAH36246.1 FLJ32549 protein [Homo sapiens] 846 0.0
ref XP_001116875.1 PREDICTED: hypothetical protein isoform 3 [M 843 0.0
ref XP_531657.2 PREDICTED: hypothetical protein XP_531657 [Cani 827 0.0
ref XP_615557.3 PREDICTED: hypothetical protein [Bos taurus] 823 0.0
gb EDL24424.1 cDNA sequence BC048403, isoform CRA_a [Mus muscul 803 0.0
ref NP_766610.2 hypothetical protein LOC270802 [Mus musculus... 803 0.0
ref XP_576234.2 PREDICTED: hypothetical protein [Rattus norv... 802 0.0
ref XP_001364942.1 PREDICTED: hypothetical protein [Monodelphis 797 0.0
ref XP_416063.1 PREDICTED: hypothetical protein [Gallus gallus] 796 0.0
dbj BAC39804.1 unnamed protein product [Mus musculus] 760 0.0
ref XP_001116868.1 PREDICTED: hypothetical protein isoform 2 [M 743 0.0
ref NP_001085035.1 hypothetical protein LOC432102 [Xenopus l... 697 0.0
ref NP_001025261.1 hypothetical protein LOC555715 [Danio rer... 665 0.0
ref NP_001076454.1 hypothetical protein LOC100005809 [Danio ... 661 0.0
ref XP_001331282.1 PREDICTED: hypothetical protein [Danio rerio 598 2e-169
emb CAG12393.1 unnamed protein product [Tetraodon nigroviridis] 593 8e-168
pdb 2GNX A Chain A, X-Ray Structure Of A Hypothetical Protein... 554 3e-156
dbj BAE41440.1 unnamed protein product [Mus musculus] 508 2e-142
ref NP_001038719.1 hypothetical protein LOC692281 [Danio rer... 357 1e-96
ref XP_624797.1 PREDICTED: hypothetical protein [Apis mellifera 235 3e-60
ref XP_974676.1 PREDICTED: hypothetical protein [Tribolium cast 232 5e-59
ref XP_001193974.1 PREDICTED: hypothetical protein [Strongyloce 208 5e-52
ref XP_797380.2 PREDICTED: hypothetical protein, partial [St... 207 2e-51
dbj BAE37112.1 unnamed protein product [Mus musculus] >dbj B... 134 2e-29
gb EDL24425.1 cDNA sequence BC048403, isoform CRA_b [Mus muscul 132 6e-29
ref XP_642387.1 hypothetical protein DDBDRAFT_0205477 [Dicty... 87.8 1e-15
emb CAJ08583.1 hypothetical protein, conserved [Leishmania majo 36.6 3.5

return to Functional Analysis

Retrieved from "http://compbio.biosci.uq.edu.au/mediawiki/index.php?title=2gnx_BlastP&oldid=5316"