2gnx BlastP: Difference between revisions

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BLASTP 2.2.12 [Aug-07-2005]
BLASTP 2.2.12 [Aug-07-2005]


Reference:
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,  
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,  
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),  
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman  
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
(1997), "Gapped BLAST and PSI-BLAST: a new generation of  
programs", Nucleic Acids Res. 25:3389-3402.
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Query= (323 letters)
Reference:
 
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei
Database: RIKEN IPS7 Protein Sequences 33,451 sequences; 15,064,402 total letters
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
 
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
Searching..................................................done
protein database searches with composition-based statistics
 
and other refinements", Nucleic Acids Res. 29:2994-3005.
E = has experimental SCL data
L = has literature-mined SCL data
O = has SCL data from external resources
P = has predicted SCL data


"***" denotes a protein that maps, with high-confidence, to a transcriptional unit that may exhibit variable membrane organization.
RID: 6T33UXG4012




                                                                Score      E
Database: All non-redundant GenBank CDS
Sequences producing significant alignments:                      (bits)    Value    SCL Data   Protein Class
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects
          5,035,888 sequences; 1,742,339,864 total letters


[[PA157757.1|Unknown (protein for MGC:86070)\]]                          597  e-171 P   Soluble, non-secreted protein
If you have any problems or questions with the results of this search
please refer to the BLAST FAQs Taxonomy reports


PA157757.12|hypothetical protein\                                    551  e-157 P   Soluble, non-secreted protein
Query= 
Length=445


PA157757.2|hypothetical protein\                                      230  1e-60 P   Type II membrane protein
[[Image:blastp.gif]]


PA72427.1|neuronal apoptosis inhibitory protein\                      30  3.1  OP   Soluble, non-secreted protein


PA177473.19|RalGDS-like factor\                                        29   5.3  OP   Soluble, non-secreted protein
Sequences producing significant alignments: 
   
{| border="1"
|-
|
|
|
| Score (Bits)
| E Value
|-
| ref
| XP_001163972.1
| PREDICTED: similar to FLJ32549 protein [Pan
| 850
| 0.0
|-
| ref
| XP_001116860.1
| PREDICTED: hypothetical protein isoform 1 [M
| 848
| 0.0
|-
| ref
| NP_689653.3
| hypothetical protein LOC144577 [Homo sapiens...
| 847
| 0.0
|-
| gb
| AAH36246.1
| FLJ32549 protein [Homo sapiens]
| 846
| 0.0
|-
| ref
| XP_001116875.1
| PREDICTED: hypothetical protein isoform 3 [M
| 843
| 0.0
|-
| ref
| XP_531657.2
| PREDICTED: hypothetical protein XP_531657 [Cani
| 827
| 0.0
|-
| ref
| XP_615557.3
| PREDICTED: hypothetical protein [Bos taurus]
| 823
| 0.0
|-
| gb
| EDL24424.1
| cDNA sequence BC048403, isoform CRA_a [Mus muscul
| 803
| 0.0
|-
| ref
| NP_766610.2
| hypothetical protein LOC270802 [Mus musculus...
| 803
| 0.0
|-
| ref
| XP_576234.2
| PREDICTED: hypothetical protein [Rattus norv...
| 802
| 0.0
|-
| ref
| XP_001364942.1
| PREDICTED: hypothetical protein [Monodelphis
| 797
| 0.0
|-
| ref
| XP_416063.1
| PREDICTED: hypothetical protein [Gallus gallus]
| 796
| 0.0
|-
| dbj
| BAC39804.1
| unnamed protein product [Mus musculus]
| 760
| 0.0
|-
| ref
| XP_001116868.1
| PREDICTED: hypothetical protein isoform 2 [M
| 743
| 0.0
|-
| ref
| NP_001085035.1
| hypothetical protein LOC432102 [Xenopus l...
| 697
| 0.0
|-
| ref
| NP_001025261.1
| hypothetical protein LOC555715 [Danio rer...
| 665
| 0.0
|-
| ref
| NP_001076454.1
| hypothetical protein LOC100005809 [Danio ...
| 661
| 0.0
|-
| ref
| XP_001331282.1
| PREDICTED: hypothetical protein [Danio rerio
| 598
| 2e-169
|-
| emb
| CAG12393.1
| unnamed protein product [Tetraodon nigroviridis]
| 593
| 8e-168
|-
| pdb
| 2GNX
| A  Chain A, X-Ray Structure Of A Hypothetical Protein...
| 554
| 3e-156
|-
| dbj
| BAE41440.1
| unnamed protein product [Mus musculus]
| 508
| 2e-142
|-
| ref
| NP_001038719.1
| hypothetical protein LOC692281 [Danio rer...
| 357
| 1e-96
|-
| ref
| XP_624797.1
| PREDICTED: hypothetical protein [Apis mellifera
| 235
| 3e-60
|-
| ref
| XP_974676.1
| PREDICTED: hypothetical protein [Tribolium cast
| 232
| 5e-59
|-
| ref
| XP_001193974.1
| PREDICTED: hypothetical protein [Strongyloce
| 208
| 5e-52
|-
| ref
| XP_797380.2
| PREDICTED: hypothetical protein, partial [St...
| 207
| 2e-51
|-
| dbj
| BAE37112.1
| unnamed protein product [Mus musculus] >dbj B...
| 134
| 2e-29
|-
| gb
| EDL24425.1
| cDNA sequence BC048403, isoform CRA_b [Mus muscul
| 132
| 6e-29
|-
| ref
| XP_642387.1
| hypothetical protein DDBDRAFT_0205477 [Dicty...
| 87.8
| 1e-15
|-
| emb
| CAJ08583.1
| hypothetical protein, conserved [Leishmania majo
| 36.6
| 3.5
|-
|}


PA82764.1|YY1 transcription factor\                                    29  5.3  LOP   Soluble, non-secreted protein
return to [[Functional Analysis]]

Latest revision as of 23:54, 11 June 2007

BLASTP 2.2.12 [Aug-07-2005]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.

Reference: Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.

RID: 6T33UXG4012


Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 

          5,035,888 sequences; 1,742,339,864 total letters

If you have any problems or questions with the results of this search please refer to the BLAST FAQs Taxonomy reports

Query= Length=445

Blastp.gif


Sequences producing significant alignments:

Score (Bits) E Value
ref XP_001163972.1 PREDICTED: similar to FLJ32549 protein [Pan 850 0.0
ref XP_001116860.1 PREDICTED: hypothetical protein isoform 1 [M 848 0.0
ref NP_689653.3 hypothetical protein LOC144577 [Homo sapiens... 847 0.0
gb AAH36246.1 FLJ32549 protein [Homo sapiens] 846 0.0
ref XP_001116875.1 PREDICTED: hypothetical protein isoform 3 [M 843 0.0
ref XP_531657.2 PREDICTED: hypothetical protein XP_531657 [Cani 827 0.0
ref XP_615557.3 PREDICTED: hypothetical protein [Bos taurus] 823 0.0
gb EDL24424.1 cDNA sequence BC048403, isoform CRA_a [Mus muscul 803 0.0
ref NP_766610.2 hypothetical protein LOC270802 [Mus musculus... 803 0.0
ref XP_576234.2 PREDICTED: hypothetical protein [Rattus norv... 802 0.0
ref XP_001364942.1 PREDICTED: hypothetical protein [Monodelphis 797 0.0
ref XP_416063.1 PREDICTED: hypothetical protein [Gallus gallus] 796 0.0
dbj BAC39804.1 unnamed protein product [Mus musculus] 760 0.0
ref XP_001116868.1 PREDICTED: hypothetical protein isoform 2 [M 743 0.0
ref NP_001085035.1 hypothetical protein LOC432102 [Xenopus l... 697 0.0
ref NP_001025261.1 hypothetical protein LOC555715 [Danio rer... 665 0.0
ref NP_001076454.1 hypothetical protein LOC100005809 [Danio ... 661 0.0
ref XP_001331282.1 PREDICTED: hypothetical protein [Danio rerio 598 2e-169
emb CAG12393.1 unnamed protein product [Tetraodon nigroviridis] 593 8e-168
pdb 2GNX A Chain A, X-Ray Structure Of A Hypothetical Protein... 554 3e-156
dbj BAE41440.1 unnamed protein product [Mus musculus] 508 2e-142
ref NP_001038719.1 hypothetical protein LOC692281 [Danio rer... 357 1e-96
ref XP_624797.1 PREDICTED: hypothetical protein [Apis mellifera 235 3e-60
ref XP_974676.1 PREDICTED: hypothetical protein [Tribolium cast 232 5e-59
ref XP_001193974.1 PREDICTED: hypothetical protein [Strongyloce 208 5e-52
ref XP_797380.2 PREDICTED: hypothetical protein, partial [St... 207 2e-51
dbj BAE37112.1 unnamed protein product [Mus musculus] >dbj B... 134 2e-29
gb EDL24425.1 cDNA sequence BC048403, isoform CRA_b [Mus muscul 132 6e-29
ref XP_642387.1 hypothetical protein DDBDRAFT_0205477 [Dicty... 87.8 1e-15
emb CAJ08583.1 hypothetical protein, conserved [Leishmania majo 36.6 3.5

return to Functional Analysis

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