2i2O References

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  • Andrade MA, Petosa C, O’Donoghue SI, Muller CW and Bork P (2001) Comparison of ARM and HEAT protein repeats. J Mol. Biol., 309, 1:1-18.

  • Aravind L and Koonin EV (2000). Eukaryotic-specific domains in translation initiation factors: Implications for translation regulation and evolution of the translation system. Genome Research. 10:1172 - 1184

  • Gough J, Karplus K, Hughey R, Chothia C (2001). Assignment of homology to genome sequences using a library of Hidden Markov Models that represent all proteins of known structure. J. Mol. Biol., 313:903-919.

  • Korneeva NL, Lamphear BJ, Hennigan FLC, Merrick WC and Rhoads RE (2001). Characterization of the two eIF4A-binding sites on human eIF4G-1. The Journal of Biological Chemistry. 276:2872 - 2879

  • Laskowski RA, Watson JD and Thornton JM (2005). Protein function prediction using local 3D templates. J. Mol. Biol., 351:614-626.

  • Madera M, Vogel C, Kummerfeld SK, Chothia C Gough J (2004). The SUPERFAMILY database in 2004: additions and improvements. Nucl. Acids Res., 32:D235-D239.

  • Marcotrigiano J, Lomakin IB, Sonenberg N, Pestova TV, Hellen CUT and Burley SK (2001) A Conserved HEAT Domain within eIF4G Directs Assembly of the Translation Initiation Machinery. Molec. Cell., 7:193-203.

  • Marintchev A and Wagner G (2005). eIF4G and CBP80 Share a Common Origin and Similar Domain Organization: Implications for the Structure and Function of eIF4G. Biochemistry, 44, 37:12265-12272.

  • McKendrick L, Thompson E, Ferreira J, Morley S and Lewis J (2001) Interaction of Eukaryotic Translation Initiation Factor 4G with the Nuclear Cap-Binding Complex Provides a Link between Nuclear and Cytoplasmic Functions of the m7 Guanosine Cap. Molec. & Cell. Biol., 21, 11:3632-3641.

  • Pal D, Suhnel J and Weiss MS (2002). New principles of protein structure: nests, eggs - and what next? Angew. Chem. Int. Ed., 41:4663-4665.

  • Perry J and Kleckner N (2003) The ATRs, ATMs and TORs Are Giant HEAT Repeat Proteins. Cell, 112, 2:151-155.

  • Watson JD and Milner-White EJ (2002). A novel main-chain anion-binding site in proteins: the nest. A particular combination of phi,psi values in successive residues gives rise to anion-binding sites that occur commonly and are found often at functionally important regions. J. Mol. Biol., 315:171-82.

  • Watson JD and Milner-White EJ (2002). The conformations of polypeptide chains where the main-chain parts of successive residues are enantiomeric. Their occurrence in cation and anion-binding regions of proteins. J. Mol. Biol., 315:183-191.

  • Yamamoto Y, Singh CR, Marintchev A, Hall NS, Hannig EM, Wagner G and Asano K (2005). The eukaryotic initiation factor (eIF) 5 HEAT domain mediates multifactor assembly and scanning with distinct interfaces to eIF1, eIF2, eIF3 and eIF4G. PNAS. 102:16164 - 16169

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