BlastP command
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E:\blast\bin\blastall -p blastp -d e:\blast\databases\nr -i H:\BIOL3004_Protein_Evolution\1PUJApsequence.fasta -o H:\BIOL3004_Protein_Evolution\1PUJABlastP.blast
E:\blast\bin\blastall -p blastp -d e:\blast\databases\nr -i H:\BIOL3004_Protein_Evolution\1PUJApsequence.fasta -o H:\BIOL3004_Protein_Evolution\1PUJABlastP.blast