DnaB Helicase
Different bacteria has different dnaB helicase protein sequence
e.g.
dnaB helicase in E. coli K12
number of aa = 471
1 magnkpfnkq qaeprerdpq vaglkvpphs ieaeqsvlgg lmldnerwdd vaervvaddf
61 ytrphrhift emarlqesgs pidlitlaes lerqgqldsv ggfaylaels kntpsaanis
121 ayadivrera vvremisvan eiaeagfdpq grtsedlldl aesrvfkiae srankdegpk
181 niadvldatv arieqlfqqp hdgvtgvntg yddlnkktag lqpsdliiva arpsmgkttf
241 amnlvenaam lqdkpvlifs lempseqimm rslaslsrvd qtkirtgqld dedwarisgt
301 mgillekrni yiddssgltp tevrsrarri arehggigli midylqlmrv palsdnrtle
361 iaeisrslka lakelnvpvv alsqlnrsle qradkrpvns dlresgsieq dadlimfiyr
421 devyhensdl kgiaeiiigk qrngpigtvr ltfngqwsrf dnyagpqydd e
dnaB helicase in H. pylori J99
number of aa = 486
1 mdhlkhlqql qnierivlsg ivlanhkiee ihsvlepsdf yypphglffe ialklhevnc
61 pidenfirqk mpkdkqised dlvaifaasp idnieayvee iknasikrkl ftlantireq
121 alesaqkssd ilnaverevy allngstieg frgikevles tmnlitenqr kgslkvtgip
181 tgfvqldnyt sgfnqgslvi lgarpsmgkt slmmnmvlsa lnddrgvavf slemsaeqla
241 lralsdltsi nmhdlesarl dddqwenlak cfdhlsqkkl ffydksyvrm dqirlqlrkl
301 ksqhkelgia fidylqlmsg nkatkerheq iaeisrelkt lareleipii alvqlnrsle
361 nrddkrpils dikdsggieq dadivlflyr gyiyqmraed nkidklkkeg kveeaqelhl
421 kvneerrihk qngsieeaei ivaknrngat gtvytrfnap ftryedmpvd shleegqetk
481 femptt
dnaB helicase in Geobacillus stearothermophilus
number of aa = 454
1 mselfserip pqsieaeqav lgavfldpaa lvpaseilip edfyraahqk ifhamlrvad
61 rgepvdlvtv taelaaseql eeiggvsyls eladavptaa nveyyarive eksvlrrlir
121 tatsiaqdgy tredeidvll deadrkimev sqrkhsgafk nikdilvqty dniemlhnrd
181 geitgiptgf teldrmtsgf qrsdliivaa rpsvgktafa lniaqnvatk tnenvaifsl
241 emsaqqlvmr mlcaegnina qnlrtgkltp edwgkltmam gslsnagiyi ddtpsirvsd
301 irakcrrlkq esglgmivid ylqliqgsgr skenrqqevs eisrslkala relevpvial
361 sqlsrsveqr qdkrpmmsdi resgsieqda divaflyrdd yynkdsenkn iieiiiakqr
421 ngpvgtvqla fikeynkfvn lerrfdeaqi ppga
22 different aa and its abbrev.
Alanine--------------A---------Ala
Cysteine------------C---------Cys
Aspartic acid------D---------Asp
Glutamic acid-----E---------Glu
Phenylalanine-----F---------Phe
Glycine--------------G---------Gly
Histidine------------H---------His
Isoleucine-----------I---------Ile
Lysine---------------K---------Lys
Leucine-------------L---------Leu
Methionine--------M---------Met
Asparagine--------N---------Asn
Pyrrolysine--------O---------Pyl
Proline--------------P---------Pro
Glutamine---------Q---------Gln
Arginine------------R---------Arg
Serine---------------S---------Ser
Threonine----------T---------Thr
Selenocysteine---U---------Sec
Valine---------------V---------Val
Tryptophan--------W--------Trp
Tyrosine------------Y---------Tyr
--ThomasHuber 09:37, 19 February 2008 (EST)
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