E. coli genomes: Difference between revisions
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= E. coli/Shigella genomes = | |||
Downloaded 14/5/09 | |||
wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_UTI89/NC_007946.gbk | |||
wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_APEC_O1/NC_008253.gbk | |||
wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_APEC_O1/NC_008563.gbk | |||
Currently it appears that only version 1.4.2 of the JRE (Java Runtime Environment) is installed, which is not suitable for all applications. To use the newer version of JRE, you need to specify the full path to the java executable that is installed in the home directory e.g. instead of | |||
java app.jar | |||
use | |||
/home/e.skippington/Programs/java/jre1.6.0_07/bin/java app.jar | |||
This has been temporarily fixed by creating a symlink in ~/bin/ of java pointing to the new version of java. | |||
Revision as of 01:26, 14 May 2009
E. coli/Shigella genomes
Downloaded 14/5/09
wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_UTI89/NC_007946.gbk wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_APEC_O1/NC_008253.gbk wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_APEC_O1/NC_008563.gbk
Currently it appears that only version 1.4.2 of the JRE (Java Runtime Environment) is installed, which is not suitable for all applications. To use the newer version of JRE, you need to specify the full path to the java executable that is installed in the home directory e.g. instead of
java app.jar
use
/home/e.skippington/Programs/java/jre1.6.0_07/bin/java app.jar
This has been temporarily fixed by creating a symlink in ~/bin/ of java pointing to the new version of java.
