E. coli genomes: Difference between revisions

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   wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_UTI89/NC_007946.gbk
   wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_UTI89/NC_007946.gbk
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_APEC_O1/NC_008253.gbk
   wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_APEC_O1/NC_008563.gbk
   wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_APEC_O1/NC_008563.gbk
 
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_536/NC_008253.gbk
 
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__W3110/AC_000091.gbk
 
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_CFT073/NC_004431.gbk
Currently it appears that only version 1.4.2 of the JRE (Java Runtime Environment) is installed, which is not suitable for all applications. To use the newer version of JRE, you need to specify the full path to the java executable that is installed in the home directory e.g. instead of
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_E24377A/NC_009801.gbk
   java app.jar
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_HS/NC_009800.gbk
use
   wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655/NC_000913.gbk
   /home/e.skippington/Programs/java/jre1.6.0_07/bin/java app.jar
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_O157H7/NC_002695.gbk
 
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_O157H7_EDL933/NC_002655.gbk
This has been temporarily fixed by creating a symlink in ~/bin/ of java pointing to the new version of java.
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_sonnei_Ss046/NC_007384.gbk
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_flexneri_5_8401/NC_008258.gbk
   wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_flexneri_2a_2457T/NC_004741.gbk
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_flexneri_2a/NC_004337.gbk
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_dysenteriae/NC_007606.gbk
  wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_boydii_Sb227/NC_007613.gbk

Revision as of 01:38, 14 May 2009

E. coli/Shigella genomes

Downloaded 14/5/09 

 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_UTI89/NC_007946.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_APEC_O1/NC_008563.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_536/NC_008253.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__W3110/AC_000091.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_CFT073/NC_004431.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_E24377A/NC_009801.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_HS/NC_009800.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655/NC_000913.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_O157H7/NC_002695.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_O157H7_EDL933/NC_002655.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_sonnei_Ss046/NC_007384.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_flexneri_5_8401/NC_008258.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_flexneri_2a_2457T/NC_004741.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_flexneri_2a/NC_004337.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_dysenteriae/NC_007606.gbk
 wget ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Shigella_boydii_Sb227/NC_007613.gbk
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